WormBase Tree Display for Variation: WBVar00230131
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| WBVar00230131 | Evidence | Paper_evidence | WBPaper00037807 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00230131 | |||
| Other_name | pas41907 | ||||
| cewivar00013748 | |||||
| Y57A10A.30.2:c.11T>C | |||||
| CE22608:p.Leu4Ser | |||||
| Y57A10A.30.1:c.11T>C | |||||
| HGVSg | CHROMOSOME_II:g.12283373T>C | ||||
| Sequence_details | SMap | S_parent | Sequence | Y57A10A | |
| Flanking_sequences | tatcctcctcttcgctcggcactctgcaaacgccagttctctcttagactcttcttccggcttgaccccagttgcggctccccaacccgctacactgggcggtcaacacttttttcgaaattttaactggccataaaaaaattttggaaattttttgagaagtctcattatgaaatttggtagttttggaccattatgagtctactaaggcactaaaaaagttcgactacaccacctttaattaattctctctgtttactgatttcaataatcgaatttttttccaggatatgactgaat | gacgacacccatctatcctctgcagcggaactggtcgtggtggttcttgaacgatgatcgcaacgcgtcttggcaggatcgtctgaaaaaggtgtacaccttcaacaccgtaccggaattctgggctttctacgaagctatccttccaccaagtggcctcaacgatctgtgcgattacaacgttttccgtgacgatattcagccgaaatgggaggctccggaaaactgggatggtggacgttggctcattatcattaacaagggaaagactcccgaagtgttggacgccgtttggctgga | |||
| Mapping_target | Y57A10A | ||||
| Type_of_mutation | Substitution | T | C | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (39) | |||||
| Laboratory | AX | ||||
| Person | WBPerson6900 | ||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| WGS_De_Bono | |||||
| Million_mutation_project_reanalysis | |||||
| History | Acquires_merge | WBVar01378560 | |||
| WBVar01246916 | |||||
| WBVar01314022 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00002063 | |||
| Transcript | Y57A10A.30.1 | VEP_consequence | missense_variant | ||
| VEP_impact | MODERATE | ||||
| HGVSc | Y57A10A.30.1:c.11T>C | ||||
| HGVSp | CE22608:p.Leu4Ser | ||||
| cDNA_position | 135 | ||||
| CDS_position | 11 | ||||
| Protein_position | 4 | ||||
| Exon_number | 3/5 | ||||
| Codon_change | tTg/tCg | ||||
| Amino_acid_change | L/S | ||||
| Y57A10A.30.2 | VEP_consequence | missense_variant | |||
| VEP_impact | MODERATE | ||||
| HGVSc | Y57A10A.30.2:c.11T>C | ||||
| HGVSp | CE22608:p.Leu4Ser | ||||
| cDNA_position | 16 | ||||
| CDS_position | 11 | ||||
| Protein_position | 4 | ||||
| Exon_number | 2/4 | ||||
| Codon_change | tTg/tCg | ||||
| Amino_acid_change | L/S | ||||
| Reference | WBPaper00037807 | ||||
| Method | WGS_Pasadena_Quinlan |
