WormBase Tree Display for Variation: WBVar00228287
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| WBVar00228287 | Evidence | Paper_evidence | WBPaper00040707 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00228287 | |||
| Other_name | pas40063 | ||||
| cewivar00094118 | |||||
| CE47044:p.Cys53= | |||||
| ZK970.2d.1:c.159T>C | |||||
| ZK970.2a.1:c.114T>C | |||||
| CE02402:p.Cys38= | |||||
| HGVSg | CHROMOSOME_II:g.10302669A>G | ||||
| Sequence_details | SMap | S_parent | Sequence | ZK970 | |
| Flanking_sequences | ttgaaatgtcggctttcatcaagttttcgtggccgaatggtctagtggtatgattctcgctttgggtgcgagaggtcccgggttcaatccccggttcggcccattcttttgttttttaatatatctctatagagacaagcaattttacctggactgttaatatacatgtgaattggttttttgccactttcgctttgaagaaacaagagttgtgcgataagtgcagaagcaatgaaatcatctacctgaaaacctaagttaatgccgaaataggataatagaaagtaccggtgtcataag | caaacgattcgatcgcgaagaagtctcgagtaaatatcatatgtacgttctccttttccttcattatcgattacaaatggaattccaacgcgtgattgaacagaagcagacatgcttctagatgctgaaagcgatgacgtcaccagccgacggagcatgattctccgagtattctgaatgtaaatggtcagaagaataaagtaatcacgatttcagattgtattcacaaatcaaaaaaacgtggaacgctcatggagataacggccgttggagacgcagagttcacgatattaatcgatt | |||
| Mapping_target | ZK970 | ||||
| Type_of_mutation | Substitution | A | G | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (27) | |||||
| Laboratory | QX | ||||
| Person | WBPerson6900 | ||||
| WBPerson1730 | |||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| Million_mutation_project_reanalysis | |||||
| WGS_Andersen | |||||
| History | Acquires_merge | WBVar01439435 | |||
| Status | Live | ||||
| Affects | Gene | WBGene00014172 | |||
| Transcript | ZK970.2d.1 | VEP_consequence | synonymous_variant | ||
| VEP_impact | LOW | ||||
| HGVSc | ZK970.2d.1:c.159T>C | ||||
| HGVSp | CE47044:p.Cys53= | ||||
| cDNA_position | 174 | ||||
| CDS_position | 159 | ||||
| Protein_position | 53 | ||||
| Exon_number | 2/7 | ||||
| Codon_change | tgT/tgC | ||||
| Amino_acid_change | C | ||||
| ZK970.2a.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | ZK970.2a.1:c.114T>C | ||||
| HGVSp | CE02402:p.Cys38= | ||||
| cDNA_position | 123 | ||||
| CDS_position | 114 | ||||
| Protein_position | 38 | ||||
| Exon_number | 2/7 | ||||
| Codon_change | tgT/tgC | ||||
| Amino_acid_change | C | ||||
| Reference | WBPaper00040707 | ||||
| Method | WGS_Pasadena_Quinlan |
