WormBase Tree Display for Variation: WBVar00227686
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| WBVar00227686 | Name | Public_name | WBVar00227686 | ||
|---|---|---|---|---|---|
| Other_name | pas39462 | ||||
| cewivar00093113 | |||||
| T24H10.7i.1:c.399-2438T>C | |||||
| T24H10.7b.1:c.648-2438T>C | |||||
| T24H10.7a.1:c.708-2438T>C | |||||
| T24H10.7d.1:c.215+883T>C | |||||
| T24H10.7f.1:c.552-2438T>C | |||||
| T24H10.7h.1:c.510-2438T>C | |||||
| T24H10.7g.1:c.276-2438T>C | |||||
| HGVSg | CHROMOSOME_II:g.9128510T>C | ||||
| Sequence_details | SMap | S_parent | Sequence | T24H10 | |
| Flanking_sequences | caatccatatttctacatctgcgtctccggcttcttaacactattcttccggtccctttctctctctcatatcaccttctcttatcacagtctcatctacatacacacccaatctctccccatttccacacagtttttgccccactttttccaacagtttttcttctagaaccatctggacgggaggggaattcccagatgaaacctgttcgtttcgcaattatttcgaaagaaatcgaaacatttcgggaaaaatggaaattgagggtgaaaaagagatgaaaggttatacaagagatg | cggaagaaaagggcaacgaactttttgggattcattgtctacgagataacaaaacgagatttgagcagttagagagtgtacaaatccatggttcagtgatttgaacactgaatctaaagtataaaaatggcatgcaagctgatgtagttttgcactggaacatttggaaacaaaacatttagagtttaaaataattctgatatttctcaatttcaaagagaaatagatgcaaataacattcatcacatttttgccaataaagttctgagccatttggaccttgatgcaattgttatagac | |||
| Mapping_target | T24H10 | ||||
| Type_of_mutation | Substitution | T | C | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00000034 | From_analysis | Million_mutation_project_reanalysis | ||
| WBStrain00004599 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00004604 | From_analysis | WGS_Pasadena_Quinlan | |||
| WBStrain00006625 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027652 | From_analysis | Million_mutation_project_reanalysis | |||
| Person | WBPerson6900 | ||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| Million_mutation_project_reanalysis | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00012005 | |||
| Transcript | T24H10.7g.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | T24H10.7g.1:c.276-2438T>C | ||||
| Intron_number | 2/3 | ||||
| T24H10.7f.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T24H10.7f.1:c.552-2438T>C | ||||
| Intron_number | 6/8 | ||||
| T24H10.7i.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T24H10.7i.1:c.399-2438T>C | ||||
| Intron_number | 3/4 | ||||
| T24H10.7h.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T24H10.7h.1:c.510-2438T>C | ||||
| Intron_number | 4/5 | ||||
| T24H10.7a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T24H10.7a.1:c.708-2438T>C | ||||
| Intron_number | 7/9 | ||||
| T24H10.7b.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T24H10.7b.1:c.648-2438T>C | ||||
| Intron_number | 7/9 | ||||
| T24H10.7d.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T24H10.7d.1:c.215+883T>C | ||||
| Intron_number | 2/4 | ||||
| Method | WGS_Pasadena_Quinlan |
