WormBase Tree Display for Variation: WBVar00225269
expand all nodes | collapse all nodes | view schema
| WBVar00225269 | Evidence | Paper_evidence | WBPaper00037807 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00225269 | |||
| Other_name | pas37045 | ||||
| cewivar00091258 | |||||
| F22D3.2j.1:c.1010+2182C>T | |||||
| F22D3.2g.1:c.1019+2182C>T | |||||
| F22D3.2d.1:c.1019+2182C>T | |||||
| F22D3.2e.1:c.1010+2182C>T | |||||
| HGVSg | CHROMOSOME_II:g.6936337C>T | ||||
| Sequence_details | SMap | S_parent | Sequence | F22D3 | |
| Flanking_sequences | tatttcctgctatctctatttctctcgcctaatttttgtctcaaatgtctctgtcctctattctgataacagctgtgctcacaggtgacataaaaggcaaatagctcataatttagtgacaccaggatatccctcttctctctcccttattcttattctacgccgatcattgatgagcaacggacacgcacatggacggcctaatggacgtacggatttgagaaacgaaaaggatttgtgtgtgtctagtttggtctgtagcaggataattcatgagaaagtcattcttcgaattgtcaa | gccgtctgcgaaactaaatccagttgagagtagcaatattaataatttatgaataattcgcttttatttgtatttaaatgtgatccctctctcagtctgaaattttttgaacacataaaactgctgacagaagacaatattctccaaggatagatgtctatcagataggtgcgagataagtggtccaaggctgctgccacctcattccctttctgattagcccgggaaaaaagtgatgttactctttctctaataaccgctgcgaatgttgccatctatcttcctcttttctagtgggtg | |||
| Mapping_target | F22D3 | ||||
| Type_of_mutation | Substitution | C | T | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (37) | |||||
| Laboratory | AX | ||||
| Person | WBPerson6900 | ||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| WGS_De_Bono | |||||
| Million_mutation_project_reanalysis | |||||
| History | Acquires_merge | WBVar01372962 | |||
| WBVar01240914 | |||||
| WBVar01307294 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00017699 | |||
| Transcript | F22D3.2g.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | F22D3.2g.1:c.1019+2182C>T | ||||
| Intron_number | 12/18 | ||||
| F22D3.2e.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F22D3.2e.1:c.1010+2182C>T | ||||
| Intron_number | 12/18 | ||||
| F22D3.2d.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F22D3.2d.1:c.1019+2182C>T | ||||
| Intron_number | 12/18 | ||||
| F22D3.2j.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F22D3.2j.1:c.1010+2182C>T | ||||
| Intron_number | 12/18 | ||||
| Reference | WBPaper00037807 | ||||
| Method | WGS_Pasadena_Quinlan |
