WormBase Tree Display for Variation: WBVar00222554
expand all nodes | collapse all nodes | view schema
| WBVar00222554 | Name | Public_name | WBVar00222554 | ||
|---|---|---|---|---|---|
| Other_name | pas34330 | ||||
| cewivar00012416 | |||||
| K07D4.7c.1:c.1043-389C>G | |||||
| K07D4.7d.1:c.62-389C>G | |||||
| K07D4.7a.1:c.1463-389C>G | |||||
| HGVSg | CHROMOSOME_II:g.4012061C>G | ||||
| Sequence_details | SMap | S_parent | Sequence | K07D4 | |
| Flanking_sequences | tcatcaggtggaaatttgaaatgcccatgacgctatgctactagtaatttttaattttatctgtaatttttttccctaaggtaggctctttttttgcaattttcattaaaaaatgaccgaaacactataattgaattagttttatattgactcaggcttcgcaaatatttttttcataacttcacagtttgacctcttattttacgaattcgctacgcgctgaaacaatattgactctaatttttgtatagtacaaattgtgtggcctattattctatgaaagcctgccgctgtaccagg | aaacacgagatccaggtggcctaaatctgttcttgtatagaagatatgtctgttagatttcactttcattttgagcttagccgccgccaatgttttcgacacttgcaagatgtgtgatgaaaaaacgatttactggtaaattttttcagccaaaagcttgagcctagcctagcgcgctatttctacgtataggtctaagcctaagccttgatacagatataaacctaagcttgagctaaatccggaacttaagcctaagcctgaatataagcctaagcccaaaccaaagtctaggcccaa | |||
| Mapping_target | K07D4 | ||||
| Type_of_mutation | Substitution | C | G | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (177) | |||||
| Laboratory | QX | ||||
| AX | |||||
| Person | WBPerson6900 | ||||
| WBPerson1730 | |||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| WGS_De_Bono | |||||
| Million_mutation_project_reanalysis | |||||
| WGS_Andersen | |||||
| History | Acquires_merge | WBVar01238443 | |||
| WBVar01437287 | |||||
| WBVar01304755 | |||||
| WBVar01369976 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00019487 | |||
| Transcript | K07D4.7d.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | K07D4.7d.1:c.62-389C>G | ||||
| Intron_number | 1/5 | ||||
| K07D4.7a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | K07D4.7a.1:c.1463-389C>G | ||||
| Intron_number | 7/12 | ||||
| K07D4.7c.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | K07D4.7c.1:c.1043-389C>G | ||||
| Intron_number | 4/8 | ||||
| Reference | WBPaper00040707 | ||||
| WBPaper00037807 | |||||
| Method | WGS_Pasadena_Quinlan |
