WormBase Tree Display for Gene: WBGene00019487
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| WBGene00019487 | SMap | S_parent | Sequence | CHROMOSOME_II | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 4 | |||||||
| Name | CGC_name | ephx-1 | Person_evidence | WBPerson105 | |||||
| Sequence_name | K07D4.7 | ||||||||
| Molecular_name (12) | |||||||||
| Other_name | tag-218 | Person_evidence | WBPerson201 | ||||||
| tag-154 | |||||||||
| Y14H12A.a | Curator_confirmed | WBPerson1983 | |||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| Y14H12A.c | Curator_confirmed | WBPerson1983 | |||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_K07D4.7 | Accession_evidence | NDB | BX284602 | ||||||
| Public_name | ephx-1 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:01 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 22 Dec 2004 16:59:41 | WBPerson2970 | Name_change | CGC_name | tag-218 | ||||
| 3 | 29 Jun 2006 14:23:44 | WBPerson2970 | Event | Acquires_merge | WBGene00006500 | ||||
| Name_change | Other_name | tag-154 | |||||||
| 4 | 21 Dec 2012 09:19:21 | WBPerson2970 | Name_change | CGC_name | ephx-1 | ||||
| Other_name | tag-218 | ||||||||
| Acquires_merge | WBGene00006500 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ephx | ||||||||
| Allele (202) | |||||||||
| Strain | WBStrain00003111 | ||||||||
| WBStrain00031449 | |||||||||
| WBStrain00048333 | |||||||||
| WBStrain00036001 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00124328 | ||||||||
| Ortholog (48) | |||||||||
| Structured_description | Automated_description | Predicted to enable guanyl-nucleotide exchange factor activity. Expressed in anchor cell; anterior distal tip cell; head; posterior distal tip cell; and uterine toroidal epithelial cell. Is an ortholog of human ARHGEF16 (Rho guanine nucleotide exchange factor 16) and ARHGEF26 (Rho guanine nucleotide exchange factor 26). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | K07D4.7a | |||||||
| K07D4.7b | |||||||||
| K07D4.7c | |||||||||
| K07D4.7d | |||||||||
| Corresponding_CDS_history | K07D4.7:wp21 | ||||||||
| K07D4.7a:wp255 | |||||||||
| Corresponding_transcript | K07D4.7a.1 | ||||||||
| K07D4.7b.1 | |||||||||
| K07D4.7c.1 | |||||||||
| K07D4.7d.1 | |||||||||
| Other_sequence (19) | |||||||||
| Associated_feature (26) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00070659 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00034073 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00016724 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00050160 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00070658 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram1934 | ||||||||
| Chronogram1963 | |||||||||
| Expr6347 | |||||||||
| Expr8755 | |||||||||
| Expr8756 | |||||||||
| Expr1028336 | |||||||||
| Expr1038420 | |||||||||
| Expr1153854 | |||||||||
| Expr2011349 | |||||||||
| Expr2029585 | |||||||||
| Drives_construct | WBCnstr00003594 | ||||||||
| WBCnstr00005766 | |||||||||
| WBCnstr00037824 | |||||||||
| Construct_product | WBCnstr00037824 | ||||||||
| Microarray_results (26) | |||||||||
| Expression_cluster (102) | |||||||||
| Interaction (34) | |||||||||
| Map_info | Map | II | Position | -5.73088 | Error | 0.03631 | |||
| Positive | Positive_clone | K07D4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 4906 | |||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00031546 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00038653 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00061388 | |||||||||
| WBPaper00061837 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
