WormBase Tree Display for Variation: WBVar00221761
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WBVar00221761 | Evidence | Paper_evidence | WBPaper00040707 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00221761 | |||
Other_name | pas33537 | ||||
cewivar00118197 | |||||
C02D4.2a.1:c.31-1169A>G | |||||
C02D4.2g.1:c.31-1169A>G | |||||
C02D4.2d.1:c.13-1169A>G | |||||
C02D4.2e.1:c.31-1169A>G | |||||
C02D4.2b.1:c.22-1169A>G | |||||
C02D4.2c.1:c.22-1169A>G | |||||
HGVSg | CHROMOSOME_X:g.15293114T>C | ||||
Sequence_details | SMap | S_parent | Sequence | C02D4 | |
Flanking_sequences | cgtagagccaggctgtcccattacggtttgatctacagaaaatgcggggattttttttcccaaaaaaagtgacttcagcatcatgcgaatacagttaaaaactctgcttctcttcatccgcattttttgtggatttaggtagatcaagccgatgtgagacactctgacatcacgtgaggacccccaatatgctaaattcaaattaaaacaagttgctttttactttcataaaaagtgaaataaagcaagaaagatggcaatttacatacgaattccctcattctttccgagagtttcgtt | attggcaaaattattctttatgagagaatttctagttcaaagatgagatatttcccacggaatacaacgaaacacaactaattcccgctttattctgcagaagtctctgtttttcgatgttttgcgaaaccggtgacgtagaataactttgaaccatttacgagaaaatactcaaaaaaaaaaaacaacacacggttgcaaaagaaaaggttaaattcttttgttctagtcgtgtgtactagtctatacattacagaccggaaattggaaaatatgtattccattagattgagtgcaatt | |||
Mapping_target | C02D4 | ||||
Type_of_mutation | Substitution | T | C | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain (70) | |||||
Laboratory | QX | ||||
Person | WBPerson6900 | ||||
WBPerson1730 | |||||
Analysis | WGS_Pasadena_Quinlan | ||||
Million_mutation_project_reanalysis | |||||
WGS_Andersen | |||||
History | Acquires_merge | WBVar01472855 | |||
Status | Live | ||||
Affects | Gene | WBGene00004777 | |||
Transcript | C02D4.2g.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | C02D4.2g.1:c.31-1169A>G | ||||
Intron_number | 1/10 | ||||
C02D4.2b.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | C02D4.2b.1:c.22-1169A>G | ||||
Intron_number | 2/12 | ||||
C02D4.2a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | C02D4.2a.1:c.31-1169A>G | ||||
Intron_number | 1/11 | ||||
C02D4.2e.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | C02D4.2e.1:c.31-1169A>G | ||||
Intron_number | 1/10 | ||||
C02D4.2c.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | C02D4.2c.1:c.22-1169A>G | ||||
Intron_number | 1/5 | ||||
C02D4.2d.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | C02D4.2d.1:c.13-1169A>G | ||||
Intron_number | 1/5 | ||||
Reference | WBPaper00040707 | ||||
Method | WGS_Pasadena_Quinlan |