WormBase Tree Display for Variation: WBVar00221759
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| WBVar00221759 | Evidence | Paper_evidence | WBPaper00040707 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00221759 | |||
| Other_name | pas33535 | ||||
| cewivar00118195 | |||||
| C02D4.2g.1:c.644+87C>A | |||||
| C02D4.2a.1:c.644+87C>A | |||||
| C02D4.2b.1:c.635+87C>A | |||||
| C02D4.2e.1:c.644+87C>A | |||||
| C02D4.2f.1:c.611+87C>A | |||||
| HGVSg | CHROMOSOME_X:g.15289645G>T | ||||
| Sequence_details | SMap | S_parent | Sequence | C02D4 | |
| Flanking_sequences | caaacctcgattagtgcggattcgttggcgagcactgatgaaaattttgacatacaccactaccatgactaggagtgggaggaagaatgaaccggcagcagagaagacaacaaaggctctggaaatagaatatgattgttgagcatttaaaactgtgcattttagaatacttgttaggtaaattttctaaaaagtaacaccttctacttttgttaaacagggatggcttctaatagttatatatataattggaattcctgactggaaaatagtttttaaaacatttatcttttgattttt | ctctttcacattcgtgtcatacttttaagtatttaaataactatgcatgtggtattttcagattcacaaactctaaaaaaatttacttttccgtagacaacccgcaactatcctccatcatattctcctgccaattattccatccaatgattggaggcactgatatgagcattgacaatatccaaacctgaaaaaaacttctccctcaactagtgagcaacacgttaaattgtgattcgtaagcaggaaagcaattgccttcattcatttctgagacgattttctctcttcgtttctttc | |||
| Mapping_target | C02D4 | ||||
| Type_of_mutation | Substitution | G | T | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (96) | |||||
| Laboratory | QX | ||||
| Person | WBPerson6900 | ||||
| WBPerson1730 | |||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| Million_mutation_project_reanalysis | |||||
| WGS_Andersen | |||||
| History | Acquires_merge | WBVar01472845 | |||
| Status | Live | ||||
| Affects | Gene | WBGene00004777 | |||
| Transcript | C02D4.2g.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | C02D4.2g.1:c.644+87C>A | ||||
| Intron_number | 6/10 | ||||
| C02D4.2b.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C02D4.2b.1:c.635+87C>A | ||||
| Intron_number | 7/12 | ||||
| C02D4.2a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C02D4.2a.1:c.644+87C>A | ||||
| Intron_number | 6/11 | ||||
| C02D4.2f.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C02D4.2f.1:c.611+87C>A | ||||
| Intron_number | 6/10 | ||||
| C02D4.2e.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C02D4.2e.1:c.644+87C>A | ||||
| Intron_number | 6/10 | ||||
| Reference | WBPaper00040707 | ||||
| Method | WGS_Pasadena_Quinlan |
