WormBase Tree Display for Variation: WBVar00219121
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WBVar00219121 | Evidence | Paper_evidence | WBPaper00037807 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00219121 | |||
Other_name | pas30897 | ||||
cewivar00111268 | |||||
Y75B8A.22.1:c.156G>A | |||||
Y75B8A.22.2:c.156G>A | |||||
CE23033:p.Arg52= | |||||
HGVSg | CHROMOSOME_III:g.12249904C>T | ||||
Sequence_details | SMap | S_parent | Sequence | Y75B8A | |
Flanking_sequences | cgattcgttttttgatggcagtgaagaagtgggcgtcggagaaggcggttttggcgcgacggaggttctcctcgagttcccagtacattttccattgatctcgatcggcgggaggcttgccgcgcatcgttgatattgcaggttggcacaggttcaccattaatctgaaattaaaaaaaaataaaaaaaatagtgagatcgcggcgagacccagctttacctaatagcaatatcgaattcatcatccgtcaaatcttcacacttcaccatcggaaccaaatcctgctcgacaagattgtg | cgcccgcattcgattcgagcagtgtgatcgtcaccgtcttcgcgtagatatcgaattaaatctcggatgctttctgaaaaaaaaaacattcaaaattgcagaaaatgagcataattggcaaaaattgctattttaatcgattttaaatcgaaaattccgcttattcaccataacaatccggttctcggctatattttccatcttcgtagtatccgagagcatggactgctccctggacgagcacattcattgaagaacctggaaatttttaaatttagctggaaatatttcgaaaataga | |||
Mapping_target | Y75B8A | ||||
Type_of_mutation | Substitution | C | T | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain (109) | |||||
Laboratory | AX | ||||
Person | WBPerson6900 | ||||
Analysis | WGS_Pasadena_Quinlan | ||||
WGS_De_Bono | |||||
Million_mutation_project_reanalysis | |||||
WGS_Andersen | |||||
History | Acquires_merge | WBVar01449260 | |||
WBVar01272180 | |||||
Status | Live | ||||
Affects | Gene | WBGene00006571 | |||
Transcript | Y75B8A.22.2 | VEP_consequence | synonymous_variant | ||
VEP_impact | LOW | ||||
HGVSc | Y75B8A.22.2:c.156G>A | ||||
HGVSp | CE23033:p.Arg52= | ||||
cDNA_position | 166 | ||||
CDS_position | 156 | ||||
Protein_position | 52 | ||||
Exon_number | 3/9 | ||||
Codon_change | cgG/cgA | ||||
Amino_acid_change | R | ||||
Y75B8A.22.1 | VEP_consequence | synonymous_variant | |||
VEP_impact | LOW | ||||
HGVSc | Y75B8A.22.1:c.156G>A | ||||
HGVSp | CE23033:p.Arg52= | ||||
cDNA_position | 166 | ||||
CDS_position | 156 | ||||
Protein_position | 52 | ||||
Exon_number | 3/9 | ||||
Codon_change | cgG/cgA | ||||
Amino_acid_change | R | ||||
Reference | WBPaper00037807 | ||||
Method | WGS_Pasadena_Quinlan |