WormBase Tree Display for Variation: WBVar00215606
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| WBVar00215606 | Evidence | Paper_evidence | WBPaper00037807 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00215606 | |||
| Other_name | pas27382 | ||||
| cewivar00109134 | |||||
| T05G5.10b.1:c.283-27A>T | |||||
| T05G5.10a.1:c.385-27A>T | |||||
| T05G5.17:n.195T>A | |||||
| HGVSg | CHROMOSOME_III:g.9746187T>A | ||||
| Sequence_details | SMap | S_parent | Sequence | T05G5 | |
| Flanking_sequences | tgaaattgtatataaatgcaattattccttggtagaaatcttgtatccgagaatagcctcctctccgcaggcagcaacgacttgaacctgaaaatcaaaattttcagattcaaaaggtggatgtcgaaataattaccaagacgcttccttcgtctttctcgagagcctcacggatagtgtttcccaagtctccttctggcattttgagatcgtctttgagctcgcaagattctggatccatgagcgagcagaacccgtcttcgatcgacatgagctgaaaatttgatcaataacattttt | acagctgattaactcatttttcaaaagatttgtttaaccgtccaaagttgatttttttgaaagccttcttaaaaactaattaacaacttacaatgtactcgcgtctcttgacgactgggacgtccatgttgtgggtggatgggcagatatcctcaagcttcttggtggtgaaaatatcgatggcaaccatgtgaaccttagcatgtccgtgctttccagtcttggaggtgctcatctcgacgatctaaaaaatttctaattaggaaaattcactgaattattttttaccttgcatggtct | |||
| Mapping_target | T05G5 | ||||
| Type_of_mutation | Substitution | T | A | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (37) | |||||
| Laboratory | AX | ||||
| Person | WBPerson6900 | ||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| WGS_De_Bono | |||||
| Million_mutation_project_reanalysis | |||||
| History | Acquires_merge | WBVar01267243 | |||
| WBVar01332216 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00002064 | |||
| WBGene00271656 | |||||
| Transcript | T05G5.10a.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | T05G5.10a.1:c.385-27A>T | ||||
| Intron_number | 4/6 | ||||
| T05G5.10b.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T05G5.10b.1:c.283-27A>T | ||||
| Intron_number | 2/4 | ||||
| T05G5.17 | VEP_consequence | non_coding_transcript_exon_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | T05G5.17:n.195T>A | ||||
| cDNA_position | 195 | ||||
| Exon_number | 1/1 | ||||
| Reference | WBPaper00037807 | ||||
| Method | WGS_Pasadena_Quinlan |
