WormBase Tree Display for Variation: WBVar00215460
expand all nodes | collapse all nodes | view schema
WBVar00215460 | Evidence | Paper_evidence | WBPaper00037807 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00215460 | |||
Other_name | pas27236 | ||||
cewivar00108933 | |||||
K01B6.1.2:c.-10-2509A>T | |||||
K01B6.1.1:c.-10-2509A>T | |||||
K01B6.1.3:c.-10-2509A>T | |||||
HGVSg | CHROMOSOME_III:g.9290686A>T | ||||
Sequence_details | SMap | S_parent | Sequence | K01B6 | |
Flanking_sequences | ggtaattagaaaaactgtgaatgatcaggcactaggcattttgcacaaatctggagaaaaagtttgcatttattgaatatcatgtgtccaatttctaaactatgtgctatgctccggagcacgctttttttgtgacgaaaagtctaccgtagtcaagttcatccccacttaaatcctctttttcttcatctcaatttaatcttaaattctccatttcacttaaaatcaagttaaaccatcggccatcaacaagttgttaagaaaaatgagctgtacgagatcatctatcaataagacgat | tcaccctctctttttcaggtaaaatctcttgcaaggaagggggcaatcttcgatgttgagatatcaatcttaaagtctcgtgcgtaactgacctgaaattagaagggaattgagctgatttgagatttaaccagcttgcttaaacctatcttggtttaagatataacttctctatttatgcctcctataaatttttagaattttttattttaggaatagttagaaagtattattcagtgtacttaaaagctagcgcaaaaatgttgcctatttctcagcgtcctcaatagcaactactgg | |||
Mapping_target | K01B6 | ||||
Type_of_mutation | Substitution | A | T | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00000034 | From_analysis | Million_mutation_project_reanalysis | ||
WBStrain00004599 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00004604 | From_analysis | WGS_Pasadena_Quinlan | |||
WBStrain00006642 | From_analysis | WGS_De_Bono | |||
WBStrain00006643 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00006645 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00027647 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00031113 | From_analysis | Million_mutation_project_reanalysis | |||
Laboratory | AX | ||||
Person | WBPerson6900 | ||||
Analysis | WGS_Pasadena_Quinlan | ||||
WGS_De_Bono | |||||
Million_mutation_project_reanalysis | |||||
History | Acquires_merge | WBVar01267024 | |||
Status | Live | ||||
Affects | Gene | WBGene00010453 | |||
Transcript | K01B6.1.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | K01B6.1.1:c.-10-2509A>T | ||||
Intron_number | 1/9 | ||||
K01B6.1.2 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | K01B6.1.2:c.-10-2509A>T | ||||
Intron_number | 2/10 | ||||
K01B6.1.3 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | K01B6.1.3:c.-10-2509A>T | ||||
Intron_number | 2/10 | ||||
Reference | WBPaper00037807 | ||||
Method | WGS_Pasadena_Quinlan |