WormBase Tree Display for Variation: WBVar00172968
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| WBVar00172968 | Name | Public_name | WBVar00172968 | ||
|---|---|---|---|---|---|
| Other_name (14) | |||||
| HGVSg | CHROMOSOME_II:g.6930673C>T | ||||
| Sequence_details | SMap | S_parent | Sequence | F22D3 | |
| Flanking_sequences | catcattaggaccatctacaagtag | tcacctccaggaataatagttcctt | |||
| Mapping_target | F22D3 | ||||
| Type_of_mutation | Substitution | C | T | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00000034 | From_analysis | Million_mutation_project_reanalysis | ||
| WBStrain00004599 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00004602 | From_analysis | WGS_De_Bono | |||
| WGS_Hawaiian_Waterston | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| WBStrain00004604 | From_analysis | WGS_Pasadena_Quinlan | |||
| WBStrain00008273 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00023192 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00023665 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00031113 | From_analysis | Million_mutation_project_reanalysis | |||
| Laboratory | RW | ||||
| AX | |||||
| Person | WBPerson1562 | ||||
| WBPerson6900 | |||||
| WBPerson4037 | |||||
| Analysis | WGS_Hawaiian_Waterston | ||||
| WGS_De_Bono | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| WGS_Pasadena_Quinlan | |||||
| History | Acquires_merge | WBVar00225266 | |||
| WBVar00551124 | |||||
| WBVar01372957 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00017699 | |||
| Transcript | F22D3.2g.1 | VEP_consequence | synonymous_variant | ||
| VEP_impact | LOW | ||||
| HGVSc | F22D3.2g.1:c.141C>T | ||||
| HGVSp | CE48418:p.Ser47= | ||||
| cDNA_position | 238 | ||||
| CDS_position | 141 | ||||
| Protein_position | 47 | ||||
| Exon_number | 4/19 | ||||
| Codon_change | agC/agT | ||||
| Amino_acid_change | S | ||||
| F22D3.2e.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | F22D3.2e.1:c.141C>T | ||||
| HGVSp | CE48451:p.Ser47= | ||||
| cDNA_position | 238 | ||||
| CDS_position | 141 | ||||
| Protein_position | 47 | ||||
| Exon_number | 4/19 | ||||
| Codon_change | agC/agT | ||||
| Amino_acid_change | S | ||||
| F22D3.2d.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | F22D3.2d.1:c.141C>T | ||||
| HGVSp | CE47786:p.Ser47= | ||||
| cDNA_position | 238 | ||||
| CDS_position | 141 | ||||
| Protein_position | 47 | ||||
| Exon_number | 4/19 | ||||
| Codon_change | agC/agT | ||||
| Amino_acid_change | S | ||||
| F22D3.2f.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | F22D3.2f.1:c.141C>T | ||||
| HGVSp | CE48472:p.Ser47= | ||||
| cDNA_position | 141 | ||||
| CDS_position | 141 | ||||
| Protein_position | 47 | ||||
| Exon_number | 2/11 | ||||
| Codon_change | agC/agT | ||||
| Amino_acid_change | S | ||||
| F22D3.2j.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | F22D3.2j.1:c.141C>T | ||||
| HGVSp | CE51723:p.Ser47= | ||||
| cDNA_position | 245 | ||||
| CDS_position | 141 | ||||
| Protein_position | 47 | ||||
| Exon_number | 4/19 | ||||
| Codon_change | agC/agT | ||||
| Amino_acid_change | S | ||||
| Reference | WBPaper00038208 | ||||
| WBPaper00037807 | |||||
| Remark | [20081124 db] this Variation was previously named hw26218 | ||||
| Method | WGS_Hawaiian_Waterston |
