WormBase Tree Display for Variation: WBVar00145463
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| WBVar00145463 | Evidence | Paper_evidence | WBPaper00004889 | ||
|---|---|---|---|---|---|
| Name | Public_name | gk7 | |||
| Other_name | B0478.1a.1:c.157-154_730-39del | ||||
| B0478.1b.1:c.-117-154_457-39del | |||||
| HGVSg | CHROMOSOME_IV:g.6960573_6961758del | ||||
| Sequence_details | SMap | S_parent | Sequence | B0478 | |
| Flanking_sequences | caagaaaagtccttgaaacagagaaatttt | tttttttttccaaatatttattctacaaat | |||
| Mapping_target | B0478 | ||||
| Type_of_mutation | Deletion | ||||
| PCR_product | GK7_external | ||||
| GK7_internal | |||||
| SeqStatus | Sequenced | ||||
| Variation_type | Allele | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00035480 | ||||
| Laboratory | VC | ||||
| Person | WBPerson427 | ||||
| KO_consortium_allele | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00002178 | |||
| Transcript | B0478.1b.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant | ||
| VEP_impact | HIGH | ||||
| HGVSc | B0478.1b.1:c.-117-154_457-39del | ||||
| Intron_number | 1-6/12 | ||||
| Exon_number | 2-6/13 | ||||
| B0478.1a.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | B0478.1a.1:c.157-154_730-39del | ||||
| Intron_number | 3-7/13 | ||||
| Exon_number | 4-7/14 | ||||
| Interactor (18) | |||||
| Genetics | Mapping_data | In_multi_point | 4450 | ||
| Description | Phenotype (33) | ||||
| Phenotype_not_observed (11) | |||||
| Disease_info | Modifies_disease | DOID:14330 | |||
| Modifies_disease_in_annotation | WBDOannot00000643 | ||||
| Reference (21) | |||||
| Remark | Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | ||
| Method | KO_consortium_allele |
