WormBase Tree Display for Variation: WBVar00144296
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WBVar00144296 | Name | Public_name | e1777 | ||||
---|---|---|---|---|---|---|---|
Other_name | e1777am | ||||||
C37F5.1b.1:c.805C>T | |||||||
CE31440:p.Gln309Ter | |||||||
CE27833:p.Gln269Ter | |||||||
C37F5.1a.1:c.925C>T | |||||||
HGVSg | CHROMOSOME_IV:g.2277404G>A | ||||||
Sequence_details | SMap | S_parent | Sequence | C37F5 | |||
Flanking_sequences | ccgtcaatctcgtctccacttctgatgctt | agcaacaccatcaaaactccccgctattcc | |||||
Mapping_target | C37F5 | ||||||
Type_of_mutation | Substitution | c | t | Paper_evidence | WBPaper00002352 | ||
SeqStatus | Sequenced | ||||||
Variation_type | Allele | ||||||
Origin | Species | Caenorhabditis elegans | |||||
Strain | WBStrain00005499 | ||||||
WBStrain00026770 | |||||||
Laboratory | CB | ||||||
Status | Live | ||||||
Affects | Gene | WBGene00002990 | |||||
Transcript | C37F5.1a.1 | VEP_consequence | stop_gained | ||||
VEP_impact | HIGH | ||||||
HGVSc | C37F5.1a.1:c.925C>T | ||||||
HGVSp | CE31440:p.Gln309Ter | ||||||
cDNA_position | 925 | ||||||
CDS_position | 925 | ||||||
Protein_position | 309 | ||||||
Exon_number | 5/7 | ||||||
Codon_change | Cag/Tag | ||||||
Amino_acid_change | Q/* | ||||||
C37F5.1b.1 | VEP_consequence | stop_gained | |||||
VEP_impact | HIGH | ||||||
HGVSc | C37F5.1b.1:c.805C>T | ||||||
HGVSp | CE27833:p.Gln269Ter | ||||||
cDNA_position | 813 | ||||||
CDS_position | 805 | ||||||
Protein_position | 269 | ||||||
Exon_number | 4/6 | ||||||
Codon_change | Cag/Tag | ||||||
Amino_acid_change | Q/* | ||||||
Interactor | WBInteraction000001242 | ||||||
WBInteraction000502389 | |||||||
WBInteraction000504230 | |||||||
WBInteraction000541772 | |||||||
WBInteraction000542312 | |||||||
WBInteraction000542313 | |||||||
WBInteraction000542314 | |||||||
Genetics | Interpolated_map_position | IV | -8.49046 | ||||
Mapping_data | In_2_point | 3277 | |||||
5217 | |||||||
6179 | |||||||
6185 | |||||||
In_multi_point (4) | |||||||
Description (2) | |||||||
Reference | WBPaper00027035 | ||||||
WBPaper00035553 | |||||||
WBPaper00032994 | |||||||
WBPaper00013779 | |||||||
WBPaper00012430 | |||||||
WBPaper00000762 | |||||||
WBPaper00014073 | |||||||
WBPaper00013862 | |||||||
WBPaper00003955 | |||||||
Method | Substitution_allele |