WormBase Tree Display for Variation: WBVar00129478
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| WBVar00129478 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| WBPaper00055507 | ||||||
| Name | Public_name | WBVar00129478 | ||||
| Other_name | cbs64999 | |||||
| cb64999 | Paper_evidence | WBPaper00055507 | ||||
| HGVSg | chrIII:g.13165394C>T | |||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc4224b | ||
| Flanking_sequences | tatttttccaatctaaaaactgatt | agaactctcaaaacatgctctttca | ||||
| Mapping_target | cb25.fpc4224b | |||||
| Type_of_mutation | Substitution | C | T | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest | RAATTY | AcsI, ApoI, XapI | 220 189 133 89 79 71 39 27 24 21 17 16 16 16 11 9 8 8 7 | ||
| CCNNGG | BsaJI, BseDI, BssECI, SecI | 977 23 | ||||
| ACNGT | Bst4CI, HpyCH4III, TaaI, Tsp4CI | 411 337 252 | ||||
| CCRYGG | BstDSI, BtgI, DsaI | 1000 | ||||
| CAC | HindI | 147 132 123 105 104 98 44 43 40 37 31 26 24 22 13 9 2 | ||||
| GANTC | HinfI | 500 265 198 37 | ||||
| TCNGA | Hpy188I | 280 265 219 92 74 64 6 | ||||
| TTAA | MseI, Tru1I, Tru9I | 356 291 154 141 58 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 135 123 119 89 70 62 54 44 39 31 27 23 21 18 16 16 16 12 11 11 10 9 9 8 8 7 6 6 | ||||
| GAWTC | TfiI | 500 265 235 | ||||
| Polymorphic_strain_digest | RAATTY | AcsI, ApoI, XapI | 220 189 142 89 79 71 39 27 24 21 17 16 16 16 11 8 8 7 | |||
| CCNNGG | BsaJI, BseDI, BssECI, SecI | 537 440 23 | ||||
| ACNGT | Bst4CI, HpyCH4III, TaaI, Tsp4CI | 337 252 215 196 | ||||
| CCRYGG | BstDSI, BtgI, DsaI | 537 463 | ||||
| CAC | HindI | 147 132 123 105 104 93 44 43 40 37 31 26 24 22 13 9 5 2 | ||||
| GANTC | HinfI | 765 198 37 | ||||
| TCNGA | Hpy188I | 484 280 92 74 64 6 | ||||
| TTAA | MseI, Tru1I, Tru9I | 356 291 199 154 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 135 123 119 89 70 62 54 44 39 31 27 23 21 19 18 16 16 16 12 11 11 9 8 8 7 6 6 | ||||
| GAWTC | TfiI | 765 235 | ||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Affects | Gene | WBGene00040022 | ||||
| Transcript | CBG21177.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG21177.1:c.1123-222C>T | |||||
| Intron_number | 8/10 | |||||
| Reference | WBPaper00030778 | |||||
| WBPaper00055507 | ||||||
| Remark | Predicted by: ssaha-SNP v2.0 | |||||
| This SNP was observed in 1 sequencing read(s) | ||||||
| Method | SNP |
