WormBase Tree Display for Variation: WBVar00129476
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| WBVar00129476 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| WBPaper00055507 | ||||||
| Name | Public_name | WBVar00129476 | ||||
| Other_name | cbs64997 | |||||
| cb64997 | Paper_evidence | WBPaper00055507 | ||||
| HGVSg | chrIII:g.13165597T>C | |||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc4224b | ||
| Flanking_sequences | aggccaccaatttttttcaaaattt | aacaaaataacgtttcagatttcaa | ||||
| Mapping_target | cb25.fpc4224b | |||||
| Type_of_mutation | Substitution | T | C | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest | RAATTY | AcsI, ApoI, XapI | 220 156 133 89 86 79 71 44 27 17 16 16 11 10 9 8 8 | ||
| CCNNGG | BsaJI, BseDI, BssECI, SecI | 774 226 | ||||
| ACNGT | Bst4CI, HpyCH4III, TaaI, Tsp4CI | 447 411 134 8 | ||||
| CCRYGG | BstDSI, BtgI, DsaI | 1000 | ||||
| CAC | HindI | 240 147 123 105 104 98 40 31 26 24 22 16 13 9 2 | ||||
| GANTC | HinfI | 703 265 32 | ||||
| TCNGA | Hpy188I | 483 265 219 27 6 | ||||
| TTAA | MseI, Tru1I, Tru9I | 291 170 153 141 108 58 56 18 5 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 123 119 89 86 70 62 44 43 42 31 27 25 24 23 20 19 17 16 16 12 11 11 10 10 10 9 9 8 8 6 | ||||
| GAWTC | TfiI | 703 265 32 | ||||
| Polymorphic_strain_digest | RAATTY | AcsI, ApoI, XapI | 220 156 142 89 86 79 71 44 27 17 16 16 11 10 8 8 | |||
| CCNNGG | BsaJI, BseDI, BssECI, SecI | 440 334 226 | ||||
| ACNGT | Bst4CI, HpyCH4III, TaaI, Tsp4CI | 447 215 196 134 8 | ||||
| CCRYGG | BstDSI, BtgI, DsaI | 666 334 | ||||
| CAC | HindI | 240 147 123 105 104 93 40 31 26 24 22 16 13 9 5 2 | ||||
| GANTC | HinfI | 968 32 | ||||
| TCNGA | Hpy188I | 484 483 27 6 | ||||
| TTAA | MseI, Tru1I, Tru9I | 291 199 170 153 108 56 18 5 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 123 119 89 86 70 62 44 43 42 31 27 25 24 23 20 19 19 17 16 16 12 11 11 10 10 9 8 8 6 | ||||
| GAWTC | TfiI | 968 32 | ||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Affects | Gene | WBGene00040022 | ||||
| Transcript | CBG21177.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG21177.1:c.1123-19T>C | |||||
| Intron_number | 8/10 | |||||
| Reference | WBPaper00030778 | |||||
| WBPaper00055507 | ||||||
| Remark | Predicted by: ssaha-SNP v2.0 | |||||
| This SNP was observed in 1 sequencing read(s) | ||||||
| Method | SNP |
