WormBase Tree Display for Variation: WBVar00129475
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| WBVar00129475 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| WBPaper00055507 | ||||||
| Name | Public_name | WBVar00129475 | ||||
| Other_name | cbs64996 | |||||
| cb64996 | Paper_evidence | WBPaper00055507 | ||||
| HGVSg | chrIII:g.13165633C>G | |||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc4224b | ||
| Flanking_sequences | cgtttcagatttcaactgaaaatgc | aagaatacggtaatgaagggacggg | ||||
| Mapping_target | cb25.fpc4224b | |||||
| Type_of_mutation | Substitution | C | G | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest | RAATTY | AcsI, ApoI, XapI | 220 156 133 89 80 79 71 50 27 17 16 16 11 10 9 8 8 | ||
| CCNNGG | BsaJI, BseDI, BssECI, SecI | 738 262 | ||||
| ACNGT | Bst4CI, HpyCH4III, TaaI, Tsp4CI | 447 411 98 44 | ||||
| CCRYGG | BstDSI, BtgI, DsaI | 1000 | ||||
| CAC | HindI | 251 147 123 105 104 98 40 31 26 25 24 13 9 4 | ||||
| GANTC | HinfI | 739 261 | ||||
| TCNGA | Hpy188I | 488 262 219 31 | ||||
| TTAA | MseI, Tru1I, Tru9I | 291 170 141 117 108 58 56 35 19 5 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 123 119 89 70 62 56 50 44 43 42 31 27 25 24 23 19 17 16 16 12 11 11 10 10 10 9 9 8 8 6 | ||||
| GAWTC | TfiI | 739 261 | ||||
| Polymorphic_strain_digest | RAATTY | AcsI, ApoI, XapI | 220 156 142 89 80 79 71 50 27 17 16 16 11 10 8 8 | |||
| CCNNGG | BsaJI, BseDI, BssECI, SecI | 440 298 262 | ||||
| ACNGT | Bst4CI, HpyCH4III, TaaI, Tsp4CI | 447 215 196 98 44 | ||||
| CCRYGG | BstDSI, BtgI, DsaI | 702 298 | ||||
| CAC | HindI | 251 147 123 105 104 93 40 31 26 25 24 13 9 5 4 | ||||
| GANTC | HinfI | 1000 | ||||
| TCNGA | Hpy188I | 488 481 31 | ||||
| TTAA | MseI, Tru1I, Tru9I | 291 199 170 117 108 56 35 19 5 | ||||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 123 119 89 70 62 56 50 44 43 42 31 27 25 24 23 19 19 17 16 16 12 11 11 10 10 9 8 8 6 | ||||
| GAWTC | TfiI | 1000 | ||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Affects | Gene | WBGene00040022 | ||||
| Transcript | CBG21177.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | |||||
| HGVSc | CBG21177.1:c.1140C>G | |||||
| HGVSp | CBP46597.1:p.Ala380%3D | |||||
| cDNA_position | 1152 | |||||
| CDS_position | 1140 | |||||
| Protein_position | 380 | |||||
| Exon_number | 9/11 | |||||
| Codon_change | gcC/gcG | |||||
| Amino_acid_change | A | |||||
| Reference | WBPaper00030778 | |||||
| WBPaper00055507 | ||||||
| Remark | Predicted by: ssaha-SNP v2.0 | |||||
| This SNP was observed in 1 sequencing read(s) | ||||||
| Method | SNP |
