WormBase Tree Display for Variation: WBVar00126599
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| WBVar00126599 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| Name | Public_name | WBVar00126599 | ||||
| Other_name | cbs62120 | |||||
| HGVSg | chrV:g.17470169T>C | |||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc4109 | ||
| Flanking_sequences | agattacggtacctgttgccagtttactcatgctcacttggggcgattaa | cgcgagatggcgcagttggtaagagaggtgttcttgaggagaacggtcaa | ||||
| Mapping_target | cb25.fpc4109 | |||||
| Type_of_mutation | Substitution | A | G | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest | RAATTY | AcsI, ApoI, XapI | 165 97 87 86 76 67 53 52 47 41 40 28 27 21 20 19 17 11 11 10 10 9 6 | ||
| TTTAAA | AhaIII, DraI | 491 160 143 127 79 | ||||
| GCGC | AspLEI, BstHHI, CfoI, HhaI, Hin6I, HinP1I, HspAI | 488 487 15 8 2 | ||||
| TTAA | MseI, Tru1I, Tru9I | 262 159 154 143 91 75 47 37 17 15 | ||||
| Polymorphic_strain_digest | RAATTY | AcsI, ApoI, XapI | 165 97 87 76 74 67 53 52 47 41 40 28 27 21 20 19 17 12 11 11 10 10 9 6 | |||
| TTTAAA | AhaIII, DraI | 491 160 143 127 63 16 | ||||
| GCGC | AspLEI, BstHHI, CfoI, HhaI, Hin6I, HinP1I, HspAI | 488 477 15 10 8 2 | ||||
| TTAA | MseI, Tru1I, Tru9I | 262 159 154 143 91 75 48 37 16 15 | ||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Affects | Gene | WBGene00037974 | ||||
| Transcript | CBG18584a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG18584a.1:c.684-986A>G | |||||
| Intron_number | 6/14 | |||||
| CBG18584b.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG18584b.1:c.684-986A>G | |||||
| Intron_number | 6/14 | |||||
| CBG18584c.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG18584c.1:c.684-986A>G | |||||
| Intron_number | 6/13 | |||||
| CBG18584d.1 | VEP_consequence | intron_variant | ||||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG18584d.1:c.684-986A>G | |||||
| Intron_number | 6/15 | |||||
| Reference | WBPaper00030778 | |||||
| Remark | Predicted by: ssaha-SNP v2.0 | |||||
| This SNP was observed in 1 sequencing read(s) | ||||||
| Method | SNP |
