WormBase Tree Display for Variation: WBVar00123010

WBVar00123010 Evidence: Paper_evidence: WBPaper00030778
  Name: Public_name: WBVar00123010
    Other_name: cbs58531
    HGVSg: chrIII:g.1390161T>C
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc4030a2
    Flanking_sequences: aatagctactaaaaaacttccaactacaaacttgtcttaaattttacgag tacatcttgcattttgaattttatttctagccatcctagttttcgagata
    Mapping_target: cb25.fpc4030a2
    Type_of_mutation: Substitution: T C
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: AGCT AluI 404 220 133 73 53 43 33 25 16
        CCNNGG BsaJI, BseDI, BssECI, SecI 592 198 108 79 23
        CCRYGG BstDSI, BtgI, DsaI 700 198 102
        RGCY CviJI, CviTI 195 133 115 76 73 65 60 53 43 33 26 25 25 24 18 16 13 7
        GTNAC MaeIII 444 431 71 54
        TTAA MseI, Tru1I, Tru9I 514 356 118 12
      Polymorphic_strain_digest: AGCT AluI 359 220 133 73 53 45 43 33 25 16
        CCNNGG BsaJI, BseDI, BssECI, SecI 379 213 198 108 79 23
        CCRYGG BstDSI, BtgI, DsaI 379 321 198 102
        RGCY CviJI, CviTI 195 133 115 73 65 60 53 45 43 33 31 26 25 25 24 18 16 13 7
        GTNAC MaeIII 515 431 54
        TTAA MseI, Tru1I, Tru9I 514 328 118 28 12
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00035885
    Transcript: CBG15740.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG15740.1:c.602-77T>C
        Intron_number: 6/13
  Reference: WBPaper00030778
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP