WormBase Tree Display for Variation: WBVar00123008

WBVar00123008 Evidence: Paper_evidence: WBPaper00030778
  Name: Public_name: WBVar00123008
    Other_name: cbs58529
    HGVSg: chrIII:g.1390084T>C
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc4030a2
    Flanking_sequences: gtctccctgtgggcgcgcttcttttcctaaccggcagagcgcgcctcaac tcaaaggcgcatatctcagaaacaataatagctactaaaaaacttccaac
    Mapping_target: cb25.fpc4030a2
    Type_of_mutation: Substitution: T C
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: AGCT AluI 404 242 133 65 46 43 33 25 9
        CCNNGG BsaJI, BseDI, BssECI, SecI 669 198 108 25
        CCRYGG BstDSI, BtgI, DsaI 777 198 25
        RGCY CviJI, CviTI 195 133 115 76 65 65 60 47 46 43 33 26 25 24 18 13 9 7
        GTNAC MaeIII 444 354 131 71
        TTAA MseI, Tru1I, Tru9I 437 356 138 37 15 12 5
      Polymorphic_strain_digest: AGCT AluI 359 242 133 65 46 45 43 33 25 9
        CCNNGG BsaJI, BseDI, BssECI, SecI 456 213 198 108 25
        CCRYGG BstDSI, BtgI, DsaI 456 321 198 25
        RGCY CviJI, CviTI 195 133 115 65 65 60 47 46 45 43 33 31 26 25 24 18 13 9 7
        GTNAC MaeIII 515 354 131
        TTAA MseI, Tru1I, Tru9I 437 328 138 37 28 15 12 5
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00035885
    Transcript: CBG15740.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG15740.1:c.602-154T>C
        Intron_number: 6/13
  Reference: WBPaper00030778
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP