WormBase Tree Display for Variation: WBVar00123006

WBVar00123006 Evidence: Paper_evidence: WBPaper00030778
  Name: Public_name: WBVar00123006
    Other_name: cbs58527
    HGVSg: chrIII:g.1388589T>G
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc4030a2
    Flanking_sequences: ttccaaacgtcttctgaagcttccagaagcttttagaaaactcaaaaatt gaaaaaaggaagaaaaagtttatatacccccagggaccacttatcatgaa
    Mapping_target: cb25.fpc4030a2
    Type_of_mutation: Substitution: T G
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: GTMKAC AccI, FblI, XmiI 1000
        RAATTY AcsI, ApoI, XapI 388 136 104 102 86 79 59 21 13 12
        GTATAC BssNAI, Bst1107I, BstZ17I 1000
        GTNNAC Hpy8I 1000
      Polymorphic_strain_digest: GTMKAC AccI, FblI, XmiI 858 142
        RAATTY AcsI, ApoI, XapI 388 222 163 102 79 21 13 12
        GTATAC BssNAI, Bst1107I, BstZ17I 857 143
        GTNNAC Hpy8I 857 143
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00035885
    Transcript: CBG15740.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG15740.1:c.224-129T>G
        Intron_number: 3/13
  Reference: WBPaper00030778
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP