WormBase Tree Display for Variation: WBVar00107945
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WBVar00107945 | Evidence | Paper_evidence | WBPaper00030778 | ||
---|---|---|---|---|---|
WBPaper00055507 | |||||
Name | Public_name | WBVar00107945 | |||
Other_name | cbs43466 | ||||
cb43466 | Paper_evidence | WBPaper00055507 | |||
HGVSg | chrII:g.7966994A>T | ||||
Sequence_details | SMap | S_parent | Sequence | cb25.fpc0058 | |
Flanking_sequences | cttttcctcttcaaacccatctctc | tcgaacgtaacaatataattgttgg | |||
Mapping_target | cb25.fpc0058 | ||||
Type_of_mutation | Substitution | A | T | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
RFLP (2) | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis briggsae | |||
Strain | WBStrain00041077 | ||||
Laboratory | CP | ||||
Person (3) | |||||
Status | Live | ||||
Affects | Gene | WBGene00025929 | |||
Transcript | CBG02975a.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | CBG02975a.1:c.55-206T>A | ||||
Intron_number | 2/25 | ||||
CBG02975b.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | CBG02975b.1:c.55-206T>A | ||||
Intron_number | 1/21 | ||||
CBG02975c.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | CBG02975c.1:c.55-206T>A | ||||
Intron_number | 2/24 | ||||
CBG02975d.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | CBG02975d.1:c.55-206T>A | ||||
Intron_number | 2/23 | ||||
CBG02975e.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | CBG02975e.1:c.55-206T>A | ||||
Intron_number | 2/24 | ||||
Reference | WBPaper00030778 | ||||
WBPaper00055507 | |||||
Remark | Predicted by: ssaha-SNP v2.0 | ||||
This SNP was observed in 1 sequencing read(s) | |||||
Method | SNP |