WormBase Tree Display for Variation: WBVar00104365
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| WBVar00104365 | Name | Public_name | WBVar00104365 | ||
|---|---|---|---|---|---|
| Other_name | pas9224 | ||||
| haw26110 | |||||
| haw131199 | |||||
| cewivar00091126 | |||||
| C04A2.3m.1:c.114-404C>T | |||||
| C04A2.3h.1:c.435-404C>T | |||||
| C04A2.3k.1:c.435-404C>T | |||||
| C04A2.3a.1:c.537-404C>T | |||||
| C04A2.3g.1:c.537-404C>T | |||||
| C04A2.3i.1:c.435-404C>T | |||||
| C04A2.3e.1:c.537-404C>T | |||||
| C04A2.3n.1:c.114-404C>T | |||||
| C04A2.3j.1:c.435-404C>T | |||||
| C04A2.3o.1:c.114-404C>T | |||||
| C04A2.3c.3:c.-1009-404C>T | |||||
| C04A2.3c.1:c.-1000-404C>T | |||||
| C04A2.3b.1:c.114-404C>T | |||||
| C04A2.3f.1:c.537-404C>T | |||||
| HGVSg | CHROMOSOME_II:g.6839789C>T | ||||
| Sequence_details | SMap | S_parent | Sequence | C04A2 | |
| Flanking_sequences | tttgcaacgtggattttttttttgaaaaactagacgtatactatttttcttcaattatagtcatacttgtaaattgaaagttaaacgtttcaaaaactattgtaaactcttcaaaacaggagcttcttgttaaaatagaggaagaaacacaaagtcgcttttcgagttgggctcagtcttttcttcttcttacgcactccggcagagccccgttgtgttacttttcatgttgcacatgcacacgccaccgcttctttttcttaatttttcatcatataattctttgtttcttggtcattt | ttttcatggtattcgcataaatttaataatttttcgtaaagtgtaagcacaacaagaaattacatacttttgaattcctttattattcttgagcagataattaaatttcaaaactattaactattaaagtttaaaattctgttcgatctcaaaatcgaattcctaaagttttattaaatcatattctctatttaatattttccaattattttgaaaattggcaaatcctttcttaaaaagtcagaaattgtttgtttttttttgttggtaaaagctgccaatccaaaatcttacttgaaa | |||
| Mapping_target | C04A2 | ||||
| Type_of_mutation | Substitution | C | T | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00000034 | From_analysis | Million_mutation_project_reanalysis | ||
| WBStrain00004599 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00004602 | From_analysis | WGS_De_Bono | |||
| WGS_Hawaiian_Waterston | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| WBStrain00004604 | From_analysis | WGS_Pasadena_Quinlan | |||
| WBStrain00006637 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00008273 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00022850 | From_analysis | WGS_De_Bono | |||
| Million_mutation_project_reanalysis | |||||
| WBStrain00023286 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00023665 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00031113 | From_analysis | Million_mutation_project_reanalysis | |||
| Laboratory | AX | ||||
| RW | |||||
| Person | WBPerson6900 | ||||
| WBPerson4037 | |||||
| WBPerson1562 | |||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| WGS_De_Bono | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| WGS_Hawaiian_Waterston | |||||
| History | Acquires_merge | WBVar01307162 | |||
| WBVar00172860 | |||||
| WBVar00551064 | |||||
| WBVar01372830 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00001194 | |||
| Transcript | C04A2.3c.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | C04A2.3c.1:c.-1000-404C>T | ||||
| Intron_number | 5/14 | ||||
| C04A2.3h.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C04A2.3h.1:c.435-404C>T | ||||
| Intron_number | 4/11 | ||||
| C04A2.3o.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C04A2.3o.1:c.114-404C>T | ||||
| Intron_number | 2/9 | ||||
| C04A2.3k.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C04A2.3k.1:c.435-404C>T | ||||
| Intron_number | 4/11 | ||||
| C04A2.3f.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C04A2.3f.1:c.537-404C>T | ||||
| Intron_number | 5/12 | ||||
| C04A2.3m.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C04A2.3m.1:c.114-404C>T | ||||
| Intron_number | 2/9 | ||||
| C04A2.3i.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C04A2.3i.1:c.435-404C>T | ||||
| Intron_number | 4/11 | ||||
| C04A2.3g.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C04A2.3g.1:c.537-404C>T | ||||
| Intron_number | 5/12 | ||||
| C04A2.3b.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C04A2.3b.1:c.114-404C>T | ||||
| Intron_number | 6/14 | ||||
| C04A2.3a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C04A2.3a.1:c.537-404C>T | ||||
| Intron_number | 6/14 | ||||
| C04A2.3c.3 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C04A2.3c.3:c.-1009-404C>T | ||||
| Intron_number | 5/14 | ||||
| C04A2.3e.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C04A2.3e.1:c.537-404C>T | ||||
| Intron_number | 5/12 | ||||
| C04A2.3j.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C04A2.3j.1:c.435-404C>T | ||||
| Intron_number | 4/11 | ||||
| C04A2.3n.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C04A2.3n.1:c.114-404C>T | ||||
| Intron_number | 2/9 | ||||
| Reference | WBPaper00038208 | ||||
| WBPaper00037807 | |||||
| Method | WGS_Pasadena_Quinlan |
