WormBase Tree Display for Variation: WBVar00098884
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WBVar00098884 | Name | Public_name | WBVar00098884 | ||
---|---|---|---|---|---|
Other_name | pas3743 | ||||
snp_F08B4[1] | |||||
cewivar00040553 | |||||
F08B4.2a.1:c.*239T>C | |||||
F08B4.2d.1:c.*298T>C | |||||
F08B4.2b.1:c.*239T>C | |||||
F08B4.2c.1:c.*298T>C | |||||
HGVSg | CHROMOSOME_IV:g.8676487T>C | ||||
Sequence_details | SMap | S_parent | Sequence | F08B4 | |
Flanking_sequences | tgattccaacaccagattatcatcaacgaacacatccaaatcaacataaatcaatactttaatcaattaaaattcaaaatattatttttgttaaaacttctatctttcaaagaatctcatgttcctcaatttctccccattttctttcagcattttcactttttcattcatttcgctcaatttgttcatcaactccttgtgacgtcccaatataggtgctcaaaatgtctaatttatatcaattttctcaccttcattctttttctctctcattcatccacatttgccagtgatttgtgt | caccccgccgtttcagtgactttaaattatttattcgacaattttaatttttttgcatgcttacaaatttgttgaaacggtgtatttacttgaaatatttttttaaatacataatacaatttaatgcagaaagtgttcataatagaggtgcatgcgggtcgacccgtatttgtaaccgaaatgggacgcgcgtcgacccgcgacccgctgcggcaaaaacgtgaagaaattaaatttatattttgaaataatataattgcaatggtgtgtttttaaactacgcgatgggtcgcgggtcga | |||
Mapping_target | F08B4 | ||||
Type_of_mutation | Substitution | T | C | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain (42) | |||||
Laboratory | AX | ||||
Person | WBPerson6900 | ||||
Analysis | WGS_Pasadena_Quinlan | ||||
WGS_De_Bono | |||||
Million_mutation_project_reanalysis | |||||
SNP_Wicks | |||||
History | Acquires_merge | WBVar01274600 | |||
WBVar00244048 | |||||
Status | Live | ||||
Affects | Gene | WBGene00000397 | |||
Transcript | F08B4.2c.1 | VEP_consequence | 3_prime_UTR_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | F08B4.2c.1:c.*298T>C | ||||
cDNA_position | 4627 | ||||
Exon_number | 24/24 | ||||
F08B4.2d.1 | VEP_consequence | 3_prime_UTR_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F08B4.2d.1:c.*298T>C | ||||
cDNA_position | 4402 | ||||
Exon_number | 24/24 | ||||
F08B4.2a.1 | VEP_consequence | 3_prime_UTR_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F08B4.2a.1:c.*239T>C | ||||
cDNA_position | 4796 | ||||
Exon_number | 24/24 | ||||
F08B4.2b.1 | VEP_consequence | 3_prime_UTR_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F08B4.2b.1:c.*239T>C | ||||
cDNA_position | 4285 | ||||
Exon_number | 23/23 | ||||
Reference | WBPaper00004703 | ||||
WBPaper00037807 | |||||
Method | WGS_Pasadena_Quinlan |