WormBase Tree Display for Variation: WBVar00098226
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WBVar00098226 | Name | Public_name | WBVar00098226 | ||
---|---|---|---|---|---|
Other_name | pas3085 | ||||
cewivar00080056 | |||||
CE40074:p.Thr268= | |||||
F56D12.1a.1:c.1224C>G | |||||
F56D12.1a.2:c.1224C>G | |||||
F56D12.1d.1:c.804C>G | |||||
CE33403:p.Thr408= | |||||
F56D12.1b.1:c.1224C>G | |||||
CE29047:p.Thr408= | |||||
HGVSg | CHROMOSOME_II:g.1307421G>C | ||||
Sequence_details | SMap | S_parent | Sequence | F56D12 | |
Flanking_sequences | gagtccctgaaaacctgtgcaaaaacttgtattttttgtagttgccaacctataaaggaactccttatcctgcgaaaaaacggcgccagtcagcccataaggtgtcgcgtctttcacagtcgcgagcacctcatcaaccttcgaatcctcgtagaccagtaccgtcaccaccggtccgaacatttcctcagtgagaagcttgctcttcggatccgtcacagtgatcagggtcggctcgatgaagtatcccgttttgtcgtcacattttccgccgagcaccacatttgctccgtcggctcc | gttttcgcaaagtcaatgtaggccttgagcctggcaaacgccttatcatcgatcacagccgacagaaagacggatccatcgcgaacctgtaaactacaaactacacaaaaatcggcaagccaaacagtggcctacatctccaagcttgatctctttgtgaatcgccgagattttctcgagaatctttggccaaatcgattttggcgcgtacatcctggagcacgccgagcacttttgtcccgaatattcccaggcggaacgggcggttccagcggcgacagcgtccacgtgggcggatgg | |||
Mapping_target | F56D12 | ||||
Type_of_mutation | Substitution | G | C | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00000034 | From_analysis | Million_mutation_project_reanalysis | ||
WBStrain00004599 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00004604 | From_analysis | WGS_Pasadena_Quinlan | |||
WBStrain00006625 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00023665 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00027652 | From_analysis | Million_mutation_project_reanalysis | |||
Person | WBPerson6900 | ||||
Analysis | WGS_Pasadena_Quinlan | ||||
Million_mutation_project_reanalysis | |||||
Status | Live | ||||
Affects | Gene | WBGene00000112 | |||
Transcript | F56D12.1b.1 | VEP_consequence | synonymous_variant | ||
VEP_impact | LOW | ||||
HGVSc | F56D12.1b.1:c.1224C>G | ||||
HGVSp | CE33403:p.Thr408= | ||||
cDNA_position | 1226 | ||||
CDS_position | 1224 | ||||
Protein_position | 408 | ||||
Exon_number | 7/8 | ||||
Codon_change | acC/acG | ||||
Amino_acid_change | T | ||||
F56D12.1a.2 | VEP_consequence | synonymous_variant | |||
VEP_impact | LOW | ||||
HGVSc | F56D12.1a.2:c.1224C>G | ||||
HGVSp | CE29047:p.Thr408= | ||||
cDNA_position | 1323 | ||||
CDS_position | 1224 | ||||
Protein_position | 408 | ||||
Exon_number | 8/10 | ||||
Codon_change | acC/acG | ||||
Amino_acid_change | T | ||||
F56D12.1a.1 | VEP_consequence | synonymous_variant | |||
VEP_impact | LOW | ||||
HGVSc | F56D12.1a.1:c.1224C>G | ||||
HGVSp | CE29047:p.Thr408= | ||||
cDNA_position | 1227 | ||||
CDS_position | 1224 | ||||
Protein_position | 408 | ||||
Exon_number | 7/9 | ||||
Codon_change | acC/acG | ||||
Amino_acid_change | T | ||||
F56D12.1d.1 | VEP_consequence | synonymous_variant | |||
VEP_impact | LOW | ||||
HGVSc | F56D12.1d.1:c.804C>G | ||||
HGVSp | CE40074:p.Thr268= | ||||
cDNA_position | 804 | ||||
CDS_position | 804 | ||||
Protein_position | 268 | ||||
Exon_number | 3/4 | ||||
Codon_change | acC/acG | ||||
Amino_acid_change | T | ||||
Method | WGS_Pasadena_Quinlan |