WormBase Tree Display for Variation: WBVar00098223
expand all nodes | collapse all nodes | view schema
WBVar00098223 | Name | Public_name | WBVar00098223 | ||
---|---|---|---|---|---|
Other_name | pas3082 | ||||
F56D12.1a.2:c.1475+6C>T | |||||
CE33403:p.Ala494Val | |||||
F56D12.1b.1:c.1481C>T | |||||
F56D12.1a.1:c.1475+6C>T | |||||
F56D12.1d.1:c.1055+6C>T | |||||
HGVSg | CHROMOSOME_II:g.1307164G>A | ||||
Sequence_details | SMap | S_parent | Sequence | F56D12 | |
Flanking_sequences | cgagggtttttattggagaaattgtgtaattatcgtttttcgacattttttaacctattttgttcggttatagagaaatttcttgaaaattgccgaaaaaacagaatttcaagatttcgaattttccgggaataattttaaatcgacttttggcagttttcttgtgcctaaaatgttgaatttcagcatttttgaacataacaaacccgaaaattcgagtttttcttctttccgctgggtttttagataaaatttttgagtccctgaaaacctgtgcaaaaacttgtattttttgtagtt | ccaacctataaaggaactccttatcctgcgaaaaaacggcgccagtcagcccataaggtgtcgcgtctttcacagtcgcgagcacctcatcaaccttcgaatcctcgtagaccagtaccgtcaccaccggtccgaacatttcctcagtgagaagcttgctcttcggatccgtcacagtgatcagggtcggctcgatgaagtatcccgttttgtcgtcacattttccgccgagcaccacatttgctccgtcggctccggttttcgcaaagtcaatgtaggccttgagcctggcaaacgcct | |||
Mapping_target | F56D12 | ||||
Type_of_mutation | Substitution | G | A | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004604 | From_analysis | WGS_Pasadena_Quinlan | ||
Person | WBPerson6900 | ||||
Analysis | WGS_Pasadena_Quinlan | ||||
Status | Live | ||||
Affects | Gene | WBGene00000112 | |||
Transcript | F56D12.1b.1 (12) | ||||
F56D12.1a.2 | VEP_consequence | splice_region_variant,intron_variant | |||
VEP_impact | LOW | ||||
HGVSc | F56D12.1a.2:c.1475+6C>T | ||||
Intron_number | 8/9 | ||||
F56D12.1a.1 | VEP_consequence | splice_region_variant,intron_variant | |||
VEP_impact | LOW | ||||
HGVSc | F56D12.1a.1:c.1475+6C>T | ||||
Intron_number | 7/8 | ||||
F56D12.1d.1 | VEP_consequence | splice_region_variant,intron_variant | |||
VEP_impact | LOW | ||||
HGVSc | F56D12.1d.1:c.1055+6C>T | ||||
Intron_number | 3/3 | ||||
Method | WGS_Pasadena_Quinlan |