WormBase Tree Display for Variation: WBVar00097553
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WBVar00097553 | Evidence | Paper_evidence | WBPaper00040707 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00097553 | |||
Other_name | pas2412 | ||||
cewivar00073046 | |||||
Y47G6A.19a.1:c.621+29C>T | |||||
Y47G6A.19d.1:c.621+29C>T | |||||
Y47G6A.19b.1:c.621+29C>T | |||||
Y47G6A.19c.1:c.621+29C>T | |||||
Y47G6A.19a.2:c.621+29C>T | |||||
HGVSg | CHROMOSOME_I:g.3528544G>A | ||||
Sequence_details | SMap | S_parent | Sequence | Y47G6A | |
Flanking_sequences | cggttcttgtgtactcgtagccatctggattcagcactggaataatgtagaggacgatgttgtcaagatagttttgaatttgtgggtcctcttctcggccgttcactatctggaattgaaaaattgaaaaaaaaaacggtctatacatcacagctgacgcgcaaagtttcaaaaagtttttgagcgtcgaatatggcgttttgaagcggtgtttgcagattttagtgctacgggccaaaagcatcatatttgacgcgcaatcacaaaacgaatgactttacgacaaagtaaagaaggtag | catataggtaggcccaccggctacataccaagttaataaaatacgaagctgtatgaattgcagcccactctctcgcatgaattccagcatcaatcacaacaatcttcttatcaggtgtatcttttccgaatttcaatccaagaatatctcgtccctcgatggttgttccaacttttatgagcttcgcaatgtctggcatattctcggctattcgttccagccaagtggaaaggactgagtaggagtagtactcgcccattctggaaatgtttaattattttttacttagtttttaaaaaa | |||
Mapping_target | Y47G6A | ||||
Type_of_mutation | Substitution | G | A | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain (32) | |||||
Laboratory | QX | ||||
Person | WBPerson6900 | ||||
WBPerson1730 | |||||
Analysis | WGS_Pasadena_Quinlan | ||||
Million_mutation_project_reanalysis | |||||
WGS_Andersen | |||||
History | Acquires_merge | WBVar01431098 | |||
Status | Live | ||||
Affects | Gene | WBGene00021645 | |||
Transcript | Y47G6A.19d.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | Y47G6A.19d.1:c.621+29C>T | ||||
Intron_number | 3/11 | ||||
Y47G6A.19a.2 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y47G6A.19a.2:c.621+29C>T | ||||
Intron_number | 2/11 | ||||
Y47G6A.19c.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y47G6A.19c.1:c.621+29C>T | ||||
Intron_number | 2/10 | ||||
Y47G6A.19b.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y47G6A.19b.1:c.621+29C>T | ||||
Intron_number | 3/12 | ||||
Y47G6A.19a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y47G6A.19a.1:c.621+29C>T | ||||
Intron_number | 2/10 | ||||
Reference | WBPaper00040707 | ||||
Method | WGS_Pasadena_Quinlan |