WormBase Tree Display for Variation: WBVar00095388
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| WBVar00095388 | Evidence | Paper_evidence | WBPaper00040707 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00095388 | |||
| Other_name | pas247 | ||||
| cewivar00017487 | |||||
| Y55B1AR.2b.1:c.1754+370T>A | |||||
| Y55B1AR.2d.1:c.1037+370T>A | |||||
| Y55B1AR.2c.1:c.1457+370T>A | |||||
| Y55B1AR.2a.1:c.1682+370T>A | |||||
| HGVSg | CHROMOSOME_III:g.591019A>T | ||||
| Sequence_details | SMap | S_parent | Sequence | Y55B1AR | |
| Flanking_sequences | ttcaaaatatctgaccagaaatagtacttaataagaattccaatgaaaaaatgaataaaattaaaaaattttctgaaaaggtagtatttaagcaacaaaagtagtattttagcaattgcagtattctagcaatagtagtattctagcaatttggtagtattctagcaaaggtagtattctagcaatagtagtattcaagcaaaagtagtattaacacaaggtagtatttcagtatttgcctaaaaaatgtctgaaaatgtgatttttcgtgtgataagcagaaaaattgtggtaaaaaat | aatagtgaaattgcgtgaaaatgtcactctgaattgatgtatacctgtctgaattccaatggatctaaaatatttgtatttaatgcctttttggaaaattctatatttttttgaattttttttttcgagttgctgaatatttcgattttttaaattttccaaaattctttccaactttatataaatttctgaattttacgttaattttcttgaaaaaaaaaacttttttttttaattttcaggaagtttctagattttttctcattttcctgaaagagttccgagttgtcttatgataat | |||
| Mapping_target | Y55B1AR | ||||
| Type_of_mutation | Substitution | A | T | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (78) | |||||
| Laboratory | QX | ||||
| Person | WBPerson6900 | ||||
| WBPerson1730 | |||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| Million_mutation_project_reanalysis | |||||
| WGS_Andersen | |||||
| History | Acquires_merge | WBVar01443115 | |||
| Status | Live | ||||
| Affects | Gene | WBGene00021906 | |||
| Transcript | Y55B1AR.2c.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y55B1AR.2c.1:c.1457+370T>A | ||||
| Intron_number | 7/9 | ||||
| Y55B1AR.2a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y55B1AR.2a.1:c.1682+370T>A | ||||
| Intron_number | 8/10 | ||||
| Y55B1AR.2d.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y55B1AR.2d.1:c.1037+370T>A | ||||
| Intron_number | 7/9 | ||||
| Y55B1AR.2b.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y55B1AR.2b.1:c.1754+370T>A | ||||
| Intron_number | 8/8 | ||||
| Reference | WBPaper00040707 | ||||
| Method | WGS_Pasadena_Quinlan |
