WormBase Tree Display for Variation: WBVar00093440

WBVar00093440 Name: Public_name: ok2280
    HGVSg: CHROMOSOME_I:g.2623044_2623518del
  Sequence_details: SMap: S_parent: Sequence: Y23H5A
    Flanking_sequences: caacgcgaccgccgaagccgcacaattctg ttctccggatctcgaagaaaaacgccgttt
    Mapping_target: Y23H5A
    Type_of_mutation: Deletion
    PCR_product: ok2280_external
      ok2280_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00036845
    Laboratory: RB
    Person: WBPerson46
    KO_consortium_allele
    Status: Live
  Affects: Gene: WBGene00305693
      WBGene00021269
      WBGene00000800
    Transcript: Y23H5A.12
      Y23H5A.2a.1 VEP_consequence: coding_sequence_variant,3_prime_UTR_variant
        VEP_impact: MODIFIER
        cDNA_position: 522-?
        CDS_position: 522-?
        Protein_position: 174-?
        Exon_number: 3-4/4
      Y23H5A.7c.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        Intron_number: 6/6
        Exon_number: 7/7
      Y23H5A.7b.1 VEP_consequence: splice_acceptor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        Intron_number: 6/7
        Exon_number: 7-8/8
      Y23H5A.2b.1 VEP_consequence: coding_sequence_variant,3_prime_UTR_variant
        VEP_impact: MODIFIER
        cDNA_position: 447-?
        CDS_position: 447-?
        Protein_position: 149-?
        Exon_number: 2/2
  Isolation: Mutagen: EMS
  Remark: Sequenced by the C. elegans Gene Knockout Consortium Paper_evidence: WBPaper00041807
  Method: KO_consortium_allele