WormBase Tree Display for Variation: WBVar00093099

WBVar00093099 Name: Public_name: ok1904
    Other_name: Y38F1A.10f.1:c.929_1597-415delinsGCTTT
      Y38F1A.10b.1:c.404_1072-415delinsGCTTT
      Y38F1A.10e.1:c.1073_1741-415delinsGCTTT
      Y38F1A.10c.1:c.1064_1732-415delinsGCTTT
      Y38F1A.10a.1:c.920_1588-415delinsGCTTT
    HGVSg: CHROMOSOME_II:g.13016631_13018850delinsAAAGC
  Sequence_details: SMap: S_parent: Sequence: Y38F1A
    Flanking_sequences: ttgaaagtgtggtgggtgggcggagattcc aaagcttttcacgatgagatgctcgaacac
    Mapping_target: Y38F1A
    Type_of_mutation: Insertion: AAAGC
      Deletion
    PCR_product: ok1904_external
      ok1904_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00036615
    Laboratory: RB
    Person: WBPerson46
    KO_consortium_allele
    Status: Live
  Affects: Gene: WBGene00003144
    Transcript: Y38F1A.10f.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: Y38F1A.10f.1:c.929_1597-415delinsGCTTT
        cDNA_position: 929-?
        CDS_position: 929-?
        Protein_position: 310-?
        Intron_number: 7-9/10
        Exon_number: 7-9/11
      Y38F1A.10d.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        Intron_number: 1-3/4
        Exon_number: 1-3/5
      Y38F1A.10a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: Y38F1A.10a.1:c.920_1588-415delinsGCTTT
        cDNA_position: 980-?
        CDS_position: 920-?
        Protein_position: 307-?
        Intron_number: 8-10/12
        Exon_number: 8-10/13
      Y38F1A.10c.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: Y38F1A.10c.1:c.1064_1732-415delinsGCTTT
        cDNA_position: 1130-?
        CDS_position: 1064-?
        Protein_position: 355-?
        Intron_number: 9-11/13
        Exon_number: 9-11/14
      Y38F1A.10e.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: Y38F1A.10e.1:c.1073_1741-415delinsGCTTT
        cDNA_position: 1133-?
        CDS_position: 1073-?
        Protein_position: 358-?
        Intron_number: 9-11/13
        Exon_number: 9-11/14
      Y38F1A.10b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: Y38F1A.10b.1:c.404_1072-415delinsGCTTT
        cDNA_position: 500-?
        CDS_position: 404-?
        Protein_position: 135-?
        Intron_number: 4-6/8
        Exon_number: 4-6/9
  Isolation: Mutagen: EMS
  Description: Phenotype: WBPhenotype:0004016 Paper_evidence: WBPaper00050708
        Curator_confirmed: WBPerson14035
  Reference: WBPaper00050708
  Remark: Sequenced by the C. elegans Gene Knockout Consortium Paper_evidence: WBPaper00041807
  Method: KO_consortium_allele