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WormBase Tree Display for Variation: WBVar00093005

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Name Class

WBVar00093005NamePublic_nameok1807
HGVSgCHROMOSOME_II:g.14063281_14065448delinsGCAGAAGAATCCGAGAACCGGGAAGGTGACTGTGAAGCAGACGAATATTTTCAACGAGGCGATTTATTTCGCGCTCTATGTGATTTTAATTTTGTTCGTCGTGCTTGGAATCGCCTACGCGCTGACAACAACGCATCGCCCGAAAACTGCGGATTTCTCGGGTTATTGGGGAGTTTTGAAGGCGGCCGGCCGAGATTCGCTCAATTTCTTCTACAATTACGCGATTCTTCCAGTCGTTTCACTGGGGATTTGTAAGTTTTGCAGTTCACCACTGCA
Sequence_detailsSMapS_parentSequenceCHROMOSOME_II
Flanking_sequencescttaatttccggtgagatattctgtagtttcttttcctcgtccctcgtgaggaaaaagttgcagtgtcgg
Mapping_targetCHROMOSOME_II
Type_of_mutationInsertionGCAGAAGAATCCGAGAACCGGGAAGGTGACTGTGAAGCAGACGAATATTTTCAACGAGGCGATTTATTTCGCGCTCTATGTGATTTTAATTTTGTTCGTCGTGCTTGGAATCGCCTACGCGCTGACAACAACGCATCGCCCGAAAACTGCGGATTTCTCGGGTTATTGGGGAGTTTTGAAGGCGGCCGGCCGAGATTCGCTCAATTTCTTCTACAATTACGCGATTCTTCCAGTCGTTTCACTGGGGATTTGTAAGTTTTGCAGTTCACCACTGCAA
Deletion
PCR_productok1807_external
ok1807_internal
SeqStatusSequenced
Variation_typeAllele
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00036509
WBStrain00047806
LaboratoryRB
PersonWBPerson46
KO_consortium_allele
StatusLive
AffectsGeneWBGene00002275
TranscriptW01G7.5.1VEP_consequencesplice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
VEP_impactHIGH
Intron_number2-3/4
Exon_number1-3/5
InteractorWBInteraction000569491
IsolationMutagenUV/TMP
DescriptionPhenotypeWBPhenotype:0000019Paper_evidenceWBPaper00059881
Curator_confirmedWBPerson712
Remarkboth lem-2 mutations show a slightly lower pharyngeal pumping rate; once again, the ca19 phenotype is slightly more severe than that of the complete gene knockout. The slower pumping rates shown by both mutants agree with previous observations made with the lem-2(tm1582) allele (Barkan et al.2012).Paper_evidenceWBPaper00059881
Curator_confirmedWBPerson712
Phenotype_assayStrainWBStrain00036509Paper_evidenceWBPaper00059881
Curator_confirmedWBPerson712
WBPhenotype:0000154Paper_evidenceWBPaper00059881
Curator_confirmedWBPerson712
Phenotype_assayStrainWBStrain00036509Paper_evidenceWBPaper00059881
Curator_confirmedWBPerson712
ReferenceWBPaper00059881
RemarkSequenced by the C. elegans Gene Knockout ConsortiumPaper_evidenceWBPaper00041807
MethodKO_consortium_allele