WormBase Tree Display for Variation: WBVar00093005
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WBVar00093005 | Name | Public_name | ok1807 | |||||
---|---|---|---|---|---|---|---|---|
HGVSg | CHROMOSOME_II:g.14063281_14065448delinsGCAGAAGAATCCGAGAACCGGGAAGGTGACTGTGAAGCAGACGAATATTTTCAACGAGGCGATTTATTTCGCGCTCTATGTGATTTTAATTTTGTTCGTCGTGCTTGGAATCGCCTACGCGCTGACAACAACGCATCGCCCGAAAACTGCGGATTTCTCGGGTTATTGGGGAGTTTTGAAGGCGGCCGGCCGAGATTCGCTCAATTTCTTCTACAATTACGCGATTCTTCCAGTCGTTTCACTGGGGATTTGTAAGTTTTGCAGTTCACCACTGCA | |||||||
Sequence_details | SMap | S_parent | Sequence | CHROMOSOME_II | ||||
Flanking_sequences | cttaatttccggtgagatattctgtagttt | cttttcctcgtccctcgtgaggaaaaagttgcagtgtcgg | ||||||
Mapping_target | CHROMOSOME_II | |||||||
Type_of_mutation | Insertion | GCAGAAGAATCCGAGAACCGGGAAGGTGACTGTGAAGCAGACGAATATTTTCAACGAGGCGATTTATTTCGCGCTCTATGTGATTTTAATTTTGTTCGTCGTGCTTGGAATCGCCTACGCGCTGACAACAACGCATCGCCCGAAAACTGCGGATTTCTCGGGTTATTGGGGAGTTTTGAAGGCGGCCGGCCGAGATTCGCTCAATTTCTTCTACAATTACGCGATTCTTCCAGTCGTTTCACTGGGGATTTGTAAGTTTTGCAGTTCACCACTGCAA | ||||||
Deletion | ||||||||
PCR_product | ok1807_external | |||||||
ok1807_internal | ||||||||
SeqStatus | Sequenced | |||||||
Variation_type | Allele | |||||||
Origin | Species | Caenorhabditis elegans | ||||||
Strain | WBStrain00036509 | |||||||
WBStrain00047806 | ||||||||
Laboratory | RB | |||||||
Person | WBPerson46 | |||||||
KO_consortium_allele | ||||||||
Status | Live | |||||||
Affects | Gene | WBGene00002275 | ||||||
Transcript | W01G7.5.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant | |||||
VEP_impact | HIGH | |||||||
Intron_number | 2-3/4 | |||||||
Exon_number | 1-3/5 | |||||||
Interactor | WBInteraction000569491 | |||||||
Isolation | Mutagen | UV/TMP | ||||||
Description | Phenotype | WBPhenotype:0000019 | Paper_evidence | WBPaper00059881 | ||||
Curator_confirmed | WBPerson712 | |||||||
Remark | both lem-2 mutations show a slightly lower pharyngeal pumping rate; once again, the ca19 phenotype is slightly more severe than that of the complete gene knockout. The slower pumping rates shown by both mutants agree with previous observations made with the lem-2(tm1582) allele (Barkan et al.2012). | Paper_evidence | WBPaper00059881 | |||||
Curator_confirmed | WBPerson712 | |||||||
Phenotype_assay | Strain | WBStrain00036509 | Paper_evidence | WBPaper00059881 | ||||
Curator_confirmed | WBPerson712 | |||||||
WBPhenotype:0000154 | Paper_evidence | WBPaper00059881 | ||||||
Curator_confirmed | WBPerson712 | |||||||
Phenotype_assay | Strain | WBStrain00036509 | Paper_evidence | WBPaper00059881 | ||||
Curator_confirmed | WBPerson712 | |||||||
Reference | WBPaper00059881 | |||||||
Remark | Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | |||||
Method | KO_consortium_allele |