WormBase Tree Display for Variation: WBVar00092363
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| WBVar00092363 | Name | Public_name | ok1094 | ||
|---|---|---|---|---|---|
| Other_name | Y54G11A.10b.1:c.-130_413del | ||||
| HGVSg | CHROMOSOME_II:g.14347803_14349166del | ||||
| Sequence_details | SMap | S_parent | Sequence | Y54G11A | |
| Flanking_sequences | taacccaccactccgttgaccgcaataagt | cgttctccgcgatcgttttcatagtaaacc | |||
| Mapping_target | Y54G11A | ||||
| Type_of_mutation | Deletion | ||||
| PCR_product | ok1094_external | ||||
| ok1094_internal | |||||
| SeqStatus | Sequenced | ||||
| Variation_type | Allele | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00036118 | ||||
| Laboratory | RB | ||||
| Person | WBPerson46 | ||||
| KO_consortium_allele | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00002996 | |||
| WBGene00185067 | |||||
| Transcript | Y54G11A.17.1 | VEP_consequence | coding_sequence_variant,3_prime_UTR_variant | ||
| VEP_impact | MODIFIER | ||||
| cDNA_position | 195-? | ||||
| CDS_position | 195-? | ||||
| Protein_position | 65-? | ||||
| Exon_number | 2-3/3 | ||||
| Y54G11A.10b.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,start_lost,5_prime_UTR_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | Y54G11A.10b.1:c.-130_413del | ||||
| cDNA_position | 195-737 | ||||
| CDS_position | ?-413 | ||||
| Protein_position | ?-138 | ||||
| Intron_number | 2-4/5 | ||||
| Exon_number | 2-5/6 | ||||
| Y54G11A.10a.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| cDNA_position | ?-413 | ||||
| CDS_position | ?-413 | ||||
| Protein_position | ?-138 | ||||
| Intron_number | 1-2/4 | ||||
| Exon_number | 1-3/5 | ||||
| Isolation | Mutagen | UV/TMP | |||
| Remark | Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | ||
| Method | KO_consortium_allele |
