WormBase Tree Display for Variation: WBVar00092249
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| WBVar00092249 | Name | Public_name | ok978 | ||
|---|---|---|---|---|---|
| Other_name | W02A2.6b.1:c.297_1430-54delinsCAGACCCTAAACGAACGTGACTAAGTGGATAGTAAAGGAGAAAATGTGCAGAAATTGCTTGGGTGAATGCACAAGGTCATGGAAAATTCAGAAAATGTAAAGAGCAAAACTTTAAAAGAAAATGACACTCTGGAAACTTTAAAAAATAACGGTAAAACGCCAGAAAACTACCAAAACAAGGAAAAATAAATCAATAAAACAGCCAACAAGGCCCAAAAACAAATCAATATTAGGTTTCAGTCAACGCTCACGTGCCACCTTGAAAAAAAACCGAAGAATGGCGAAATTGACCTAAAAATAGTGACAAATTTGATTTCGAAATATTTCGCGCCACGTCGCGAAATGCGCCAGCAAAAAAACGCGCCAACTTA | ||||
| W02A2.6a.1:c.879_2012-54delinsCAGACCCTAAACGAACGTGACTAAGTGGATAGTAAAGGAGAAAATGTGCAGAAATTGCTTGGGTGAATGCACAAGGTCATGGAAAATTCAGAAAATGTAAAGAGCAAAACTTTAAAAGAAAATGACACTCTGGAAACTTTAAAAAATAACGGTAAAACGCCAGAAAACTACCAAAACAAGGAAAAATAAATCAATAAAACAGCCAACAAGGCCCAAAAACAAATCAATATTAGGTTTCAGTCAACGCTCACGTGCCACCTTGAAAAAAAACCGAAGAATGGCGAAATTGACCTAAAAATAGTGACAAATTTGATTTCGAAATATTTCGCGCCACGTCGCGAAATGCGCCAGCAAAAAAACGCGCCAACTTA | |||||
| HGVSg | CHROMOSOME_IV:g.13350155_13351731delinsTAAGTTGGCGCGTTTTTTTGCTGGCGCATTTCGCGACGTGGCGCGAAATATTTCGAAATCAAATTTGTCACTATTTTTAGGTCAATTTCGCCATTCTTCGGTTTTTTTTCAAGGTGGCACGTGAGCGTTGACTGAAACCTAATATTGATTTGTTTTTGGGCCTTGTTGGCTGTTTTATTGATTTATTTTTCCTTGTTTTGGTAGTTTTCTGGCGTTTTACCGTTATTTTTTAAAGTTTCCAGAGTGTCATTTTCTTTTAAAGTTTTGCTCTTTACATTTTCTGAATTTTCCATGACCTTGTGCATTCACCCAAGCAATTTCTGCACATTTTCTCCTTTACTATCCACTTAGTCACGTTCGTTTAGGGTCTG | ||||
| Sequence_details | SMap | S_parent | Sequence | W02A2 | |
| Flanking_sequences | ataaagtgggggcgacaaccgaaagtttga | tggggtgctggttgttccacggtttcactc | |||
| Mapping_target | W02A2 | ||||
| Type_of_mutation | Insertion | TAAGTTGGCGCGTTTTTTTGCTGGCGCATTTCGCGACGTGGCGCGAAATATTTCGAAATCAAATTTGTCACTATTTTTAGGTCAATTTCGCCATTCTTCGGTTTTTTTTCAAGGTGGCACGTGAGCGTTGACTGAAACCTAATATTGATTTGTTTTTGGGCCTTGTTGGCTGTTTTATTGATTTATTTTTCCTTGTTTTGGTAGTTTTCTGGCGTTTTACCGTTATTTTTTAAAGTTTCCAGAGTGTCATTTTCTTTTAAAGTTTTGCTCTTTACATTTTCTGAATTTTCCATGACCTTGTGCATTCACCCAAGCAATTTCTGCACATTTTCTCCTTTACTATCCACTTAGTCACGTTCGTTTAGGGTCTG | |||
| Deletion | |||||
| PCR_product | ok978_external | ||||
| ok978_internal | |||||
| SeqStatus | Sequenced | ||||
| Variation_type | Allele | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00035158 | ||||
| WBStrain00035162 | |||||
| WBStrain00035163 | |||||
| WBStrain00035963 | |||||
| Laboratory | RB | ||||
| Person | WBPerson46 | ||||
| KO_consortium_allele | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00004333 | |||
| Transcript | W02A2.6a.1 | VEP_consequence | splice_donor_variant,coding_sequence_variant,intron_variant | ||
| VEP_impact | HIGH | ||||
| HGVSc | W02A2.6a.1:c.879_2012-54delinsCAGACCCTAAACGAACGTGACTAAGTGGATAGTAAAGGAGAAAATGTGCAGAAATTGCTTGGGTGAATGCACAAGGTCATGGAAAATTCAGAAAATGTAAAGAGCAAAACTTTAAAAGAAAATGACACTCTGGAAACTTTAAAAAATAACGGTAAAACGCCAGAAAACTACCAAAACAAGGAAAAATAAATCAATAAAACAGCCAACAAGGCCCAAAAACAAATCAATATTAGGTTTCAGTCAACGCTCACGTGCCACCTTGAAAAAAAACCGAAGAATGGCGAAATTGACCTAAAAATAGTGACAAATTTGATTTCGAAATATTTCGCGCCACGTCGCGAAATGCGCCAGCAAAAAAACGCGCCAACTTA | ||||
| cDNA_position | 879-? | ||||
| CDS_position | 879-? | ||||
| Protein_position | 293-? | ||||
| Intron_number | 5/8 | ||||
| Exon_number | 5/9 | ||||
| W02A2.6b.1 | VEP_consequence | splice_donor_variant,coding_sequence_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | W02A2.6b.1:c.297_1430-54delinsCAGACCCTAAACGAACGTGACTAAGTGGATAGTAAAGGAGAAAATGTGCAGAAATTGCTTGGGTGAATGCACAAGGTCATGGAAAATTCAGAAAATGTAAAGAGCAAAACTTTAAAAGAAAATGACACTCTGGAAACTTTAAAAAATAACGGTAAAACGCCAGAAAACTACCAAAACAAGGAAAAATAAATCAATAAAACAGCCAACAAGGCCCAAAAACAAATCAATATTAGGTTTCAGTCAACGCTCACGTGCCACCTTGAAAAAAAACCGAAGAATGGCGAAATTGACCTAAAAATAGTGACAAATTTGATTTCGAAATATTTCGCGCCACGTCGCGAAATGCGCCAGCAAAAAAACGCGCCAACTTA | ||||
| cDNA_position | 297-? | ||||
| CDS_position | 297-? | ||||
| Protein_position | 99-? | ||||
| Intron_number | 1/3 | ||||
| Exon_number | 1/4 | ||||
| Isolation | Mutagen | UV/TMP | |||
| Reference | WBPaper00064969 | ||||
| WBPaper00065293 | |||||
| Remark | Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | ||
| Method | KO_consortium_allele |
