WormBase Tree Display for Variation: WBVar00091789
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| WBVar00091789 | Name | Public_name | ok501 | ||
|---|---|---|---|---|---|
| HGVSg | CHROMOSOME_I:g.6009128_6010960del | ||||
| Sequence_details | SMap | S_parent | Sequence | C06A5 | |
| Flanking_sequences | tttcattccctgactcacccataatcgcaa | atttattatcaatcatttcatctctattcg | |||
| Mapping_target | C06A5 | ||||
| Type_of_mutation | Deletion | ||||
| PCR_product | ok501_external | ||||
| ok501_internal | |||||
| SeqStatus | Sequenced | ||||
| Variation_type | Allele | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00035613 | ||||
| Laboratory | RB | ||||
| Person | WBPerson46 | ||||
| KO_consortium_allele | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00004380 | |||
| WBGene00015505 | |||||
| Transcript | C06A5.8b.2 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant | ||
| VEP_impact | HIGH | ||||
| cDNA_position | ?-252 | ||||
| CDS_position | ?-88 | ||||
| Protein_position | ?-30 | ||||
| Intron_number | 1/5 | ||||
| Exon_number | 1-3/6 | ||||
| C06A5.8a.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| cDNA_position | ?-298 | ||||
| CDS_position | ?-292 | ||||
| Protein_position | ?-98 | ||||
| Intron_number | 2-3/7 | ||||
| Exon_number | 1-4/8 | ||||
| C06A5.8b.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| cDNA_position | ?-256 | ||||
| CDS_position | ?-88 | ||||
| Protein_position | ?-30 | ||||
| Intron_number | 1-2/6 | ||||
| Exon_number | 1-4/7 | ||||
| C06A5.9.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,3_prime_UTR_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| cDNA_position | 481-? | ||||
| CDS_position | 365-? | ||||
| Protein_position | 122-? | ||||
| Intron_number | 5-10/11 | ||||
| Exon_number | 5-12/12 | ||||
| Isolation | Mutagen | UV/TMP | |||
| Genetics | Mapping_data | In_multi_point | 4638 | ||
| Remark | Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | ||
| Method | KO_consortium_allele |
