WormBase Tree Display for Gene: WBGene00004380

WBGene00004380 Evidence: CGC_data_submission
  SMap: S_parent: Sequence: C06A5
  Identity: Version: 1
    Name: CGC_name: rnf-1 Person_evidence: WBPerson250
      Sequence_name: C06A5.9
      Molecular_name: C06A5.9
        C06A5.9.1
        CE34249
      Other_name: tag-54 CGC_data_submission
        CELE_C06A5.9 Accession_evidence: NDB BX284601
      Public_name: rnf-1
    DB_info: Database: AceView gene 1G586
        WormQTL gene WBGene00004380
        WormFlux gene WBGene00004380
        NDB locus_tag CELE_C06A5.9
        Panther gene CAEEL|WormBase=WBGene00004380|UniProtKB=O01482
          family PTHR22791
        NCBI gene 172277
        RefSeq protein NM_059337.5
        TREEFAM TREEFAM_ID TF322757
        TrEMBL UniProtAcc O01482
        UniProt_GCRP UniProtAcc O01482
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:35 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: rnf
    Allele (32)
    Strain: WBStrain00035613
    RNASeq_FPKM (74)
    GO_annotation: 00024737
      00024738
      00024739
      00024740
      00024741
      00024742
      00024743
    Ortholog (20)
    Paralog: WBGene00015505 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
    Structured_description: Automated_description: Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination. Is an ortholog of human RNF183 (ring finger protein 183). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C06A5.9
    Corresponding_CDS_history: C06A5.9:wp101
    Corresponding_transcript: C06A5.9.1
    Other_sequence: CRC10081_1
    Associated_feature: WBsf649209
      WBsf664311
      WBsf664312
      WBsf219522
  Experimental_info: RNAi_result: WBRNAi00094732 Inferred_automatically: RNAi_primary
      WBRNAi00062109 Inferred_automatically: RNAi_primary
      WBRNAi00002915 Inferred_automatically: RNAi_primary
      WBRNAi00076090 Inferred_automatically: RNAi_primary
      WBRNAi00028537 Inferred_automatically: RNAi_primary
      WBRNAi00039827 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1010629
      Expr1032191
      Expr1143908
      Expr2015383
      Expr2033617
    Drives_construct: WBCnstr00035525
    Construct_product: WBCnstr00035525
    Microarray_results (16)
    Expression_cluster (138)
    Interaction (234)
  Map_info: Map: I Position: 0.668207 Error: 0.00357
    Positive: Positive_clone: C06A5 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Mapping_data: Multi_point: 4638
        4946
    Pseudo_map_position
  Reference: WBPaper00010203
    WBPaper00019709
    WBPaper00027315
    WBPaper00030484
    WBPaper00064107
  Remark: Gene name created from parsing 'genotype' field from CGC strain information CGC_data_submission
    Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene