WormBase Tree Display for Variation: WBVar00091028

WBVar00091028 Evidence: Paper_evidence: WBPaper00029073
  Name: Public_name: WBVar00091028
    Other_name: niDf7(X)
      F39C12.3b.1:c.36-502_641delinsAG
      F39C12.3a.3:c.-37-502_569delinsAG
      F39C12.3a.1:c.-37-502_569delinsAG
    HGVSg: CHROMOSOME_X:g.4868936_4871561delinsCT
  Sequence_details: SMap: S_parent: Sequence: F39C12
    Flanking_sequences: actccacacttttctggttgaggatttgaa ctctcaagcaccctcagtgtgtaaaattaa
    Mapping_target: F39C12
    Type_of_mutation: Insertion: CT
      Deletion
    PCR_product: niDf7(X)_external
      niDf7(X)_internal
    SeqStatus: Sequenced
  Variation_type: Natural_variant
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00033541
    Laboratory: VC
    Person: WBPerson427
    Detection_method: Oligo Array CGH
    Status: Live
  Affects: Gene: WBGene00006640
    Transcript: F39C12.3a.3 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F39C12.3a.3:c.-37-502_569delinsAG
        cDNA_position: ?-755
        CDS_position: ?-569
        Protein_position: ?-190
        Intron_number: 1-6/10
        Exon_number: 2-7/11
      F39C12.3a.2 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        cDNA_position: ?-606
        CDS_position: ?-569
        Protein_position: ?-190
        Intron_number: 2-5/9
        Exon_number: 1-6/10
      F39C12.3a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F39C12.3a.1:c.-37-502_569delinsAG
        cDNA_position: ?-727
        CDS_position: ?-569
        Protein_position: ?-190
        Intron_number: 1-6/10
        Exon_number: 2-7/11
      F39C12.3b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F39C12.3b.1:c.36-502_641delinsAG
        cDNA_position: ?-727
        CDS_position: ?-641
        Protein_position: ?-214
        Intron_number: 2-6/9
        Exon_number: 3-7/10
  Reference: WBPaper00029073
  Remark: Sequenced by the Vancouver Gene Knockout Lab (part of the C. elegans Gene Knockout Consortium)
    The current sequence data supercedes the original CGH (Natural_variant) data. Original CGH data: 'Flanking_sequence TTAGAGCATTTTGCCAGCACTCTAAAGATCTCATTGCAGGTAACAGTGGA AAGTGGGTCACTCAGTAACAATTGTGTGTCTCTTTTCCCTCTACAAAACA' CGH_deleted_probes AACTCCACACTTTTCTGGTTGAGGATTTGAATTGGTACAGTTGAACTGGT GCAGATATTTCCTGTCGTGGTTTGCGTTGCTTGTGTGATGATGAGACCAC. Flanking sequences represent the nearest array oligo sequences present in the deletion chromosome on the basis of fluorescence ratio. These should not be considered hard breakpoints in the absence of actual sequence data. Original data available on-line at http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE6294
  Method: CGH_allele