WormBase Tree Display for Variation: WBVar00089930
expand all nodes | collapse all nodes | view schema
| WBVar00089930 | Evidence | Paper_evidence | WBPaper00003778 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| Name | Public_name | n1059 | |||||||
| Other_name (19) | |||||||||
| HGVSg | CHROMOSOME_IV:g.11060552_11060553delinsAA | ||||||||
| Sequence_details | SMap | S_parent | Sequence | F36H1 | |||||
| Flanking_sequences | gtaatcctttttgcagttgtccacagggtt | gaaggcactcgttgtgatcgtcactacgtt | |||||||
| Mapping_target | F36H1 | ||||||||
| Type_of_mutation | Substitution | gg | rr | Paper_evidence | WBPaper00003778 | ||||
| SeqStatus | Sequenced | ||||||||
| Variation_type | Allele | ||||||||
| Origin | Species | Caenorhabditis elegans | |||||||
| Strain | WBStrain00027146 | ||||||||
| WBStrain00035422 | |||||||||
| WBStrain00035423 | |||||||||
| WBStrain00035424 | |||||||||
| Laboratory | MT | ||||||||
| Status | Live | ||||||||
| Linked_to | WBVar00089467 | ||||||||
| Affects | Gene | WBGene00002992 | |||||||
| Transcript (11) | |||||||||
| Genetics | Interpolated_map_position | IV | 4.821 | ||||||
| Mapping_data | In_multi_point | 1640 | |||||||
| Description | Phenotype | WBPhenotype:0000057 | Person_evidence | WBPerson261 | |||||
| Curator_confirmed | WBPerson712 | ||||||||
| WBPhenotype:0000411 | Paper_evidence | WBPaper00000762 | |||||||
| Curator_confirmed | WBPerson2021 | ||||||||
| Penetrance | Complete | Paper_evidence | WBPaper00000762 | ||||||
| Curator_confirmed | WBPerson2021 | ||||||||
| Recessive | Paper_evidence | WBPaper00000762 | |||||||
| Curator_confirmed | WBPerson2021 | ||||||||
| EQ_annotations | Life_stage | WBls:0000023 | PATO:0000460 | Paper_evidence | WBPaper00000762 | ||||
| Curator_confirmed | WBPerson2021 | ||||||||
| WBPhenotype:0000698 | Paper_evidence | WBPaper00000762 | |||||||
| Curator_confirmed | WBPerson2021 | ||||||||
| Remark | Only observed in lin-3 heteroallelic strains | Paper_evidence | WBPaper00000762 | ||||||
| Curator_confirmed | WBPerson2021 | ||||||||
| Penetrance | High | Paper_evidence | WBPaper00000762 | ||||||
| Curator_confirmed | WBPerson2021 | ||||||||
| Range | 99 | 100 | Paper_evidence | WBPaper00000762 | |||||
| Curator_confirmed | WBPerson2021 | ||||||||
| Recessive | Paper_evidence | WBPaper00000762 | |||||||
| Curator_confirmed | WBPerson2021 | ||||||||
| EQ_annotations | Life_stage | WBls:0000057 | PATO:0000460 | Paper_evidence | WBPaper00000762 | ||||
| Curator_confirmed | WBPerson2021 | ||||||||
| Phenotype_assay | Genotype | n1059/e1417, n1059/n378 | Paper_evidence | WBPaper00000762 | |||||
| Curator_confirmed | WBPerson2021 | ||||||||
| WBPhenotype:0001278 | Paper_evidence | WBPaper00057074 | |||||||
| Curator_confirmed | WBPerson712 | ||||||||
| Remark | "Twenty-two percentage of lin-3(n1059) mutants lost Punc-25GFP expression in RMED, and 13% lost the expression in RMEV (N=45")." | Paper_evidence | WBPaper00057074 | ||||||
| Curator_confirmed | WBPerson712 | ||||||||
| Image | WBPicture0000014913 | Paper_evidence | WBPaper00057074 | ||||||
| Curator_confirmed | WBPerson712 | ||||||||
| EQ_annotations | Anatomy_term | WBbt:0005027 | PATO:0000460 | Paper_evidence | WBPaper00057074 | ||||
| Curator_confirmed | WBPerson712 | ||||||||
| WBbt:0005021 | PATO:0000460 | Paper_evidence | WBPaper00057074 | ||||||
| Curator_confirmed | WBPerson712 | ||||||||
| WBPhenotype:0002066 | Paper_evidence | WBPaper00038447 | |||||||
| Curator_confirmed | WBPerson712 | ||||||||
| Remark | Animals are lin-3(n1059)/lin-3(n378)- the basement membrane gap never extended beyond the anchor cell. | Paper_evidence | WBPaper00038447 | ||||||
| Curator_confirmed | WBPerson712 | ||||||||
| Reference (12) | |||||||||
| Method | Substitution_allele |
