WormBase Tree Display for Variation: WBVar00088859
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| WBVar00088859 | Evidence | Paper_evidence | WBPaper00004891 | ||||
|---|---|---|---|---|---|---|---|
| Name | Public_name | md1995 | |||||
| Other_name (12) | |||||||
| HGVSg | CHROMOSOME_X:g.7275260C>T | ||||||
| Sequence_details | SMap | S_parent | Sequence | T10A3 | |||
| Flanking_sequences | tgttatagcagagacactcatgccagtttg | gatgaagttttttactataatggccttact | |||||
| Mapping_target | T10A3 | ||||||
| Type_of_mutation | Substitution | g | a | Paper_evidence | WBPaper00004891 | ||
| SeqStatus | Sequenced | ||||||
| Variation_type | Allele | ||||||
| Origin | Species | Caenorhabditis elegans | |||||
| Laboratory | RM | ||||||
| Status | Live | ||||||
| Affects | Gene | WBGene00006750 | |||||
| Transcript | T10A3.1c.1 | VEP_consequence | stop_gained | ||||
| VEP_impact | HIGH | ||||||
| HGVSc | T10A3.1c.1:c.2682G>A | ||||||
| HGVSp | CE53614:p.Trp894Ter | ||||||
| cDNA_position | 2682 | ||||||
| CDS_position | 2682 | ||||||
| Protein_position | 894 | ||||||
| Exon_number | 19/29 | ||||||
| Codon_change | tgG/tgA | ||||||
| Amino_acid_change | W/* | ||||||
| T10A3.1d.1 | VEP_consequence | stop_gained | |||||
| VEP_impact | HIGH | ||||||
| HGVSc | T10A3.1d.1:c.2676G>A | ||||||
| HGVSp | CE53668:p.Trp892Ter | ||||||
| cDNA_position | 2676 | ||||||
| CDS_position | 2676 | ||||||
| Protein_position | 892 | ||||||
| Exon_number | 19/28 | ||||||
| Codon_change | tgG/tgA | ||||||
| Amino_acid_change | W/* | ||||||
| T10A3.1e.1 | VEP_consequence | stop_gained | |||||
| VEP_impact | HIGH | ||||||
| HGVSc | T10A3.1e.1:c.2682G>A | ||||||
| HGVSp | CE53500:p.Trp894Ter | ||||||
| cDNA_position | 2682 | ||||||
| CDS_position | 2682 | ||||||
| Protein_position | 894 | ||||||
| Exon_number | 19/28 | ||||||
| Codon_change | tgG/tgA | ||||||
| Amino_acid_change | W/* | ||||||
| T10A3.1b.1 | VEP_consequence | stop_gained | |||||
| VEP_impact | HIGH | ||||||
| HGVSc | T10A3.1b.1:c.2721G>A | ||||||
| HGVSp | CE31234:p.Trp907Ter | ||||||
| cDNA_position | 2721 | ||||||
| CDS_position | 2721 | ||||||
| Protein_position | 907 | ||||||
| Exon_number | 18/28 | ||||||
| Codon_change | tgG/tgA | ||||||
| Amino_acid_change | W/* | ||||||
| T10A3.1a.1 | VEP_consequence | stop_gained | |||||
| VEP_impact | HIGH | ||||||
| HGVSc | T10A3.1a.1:c.2721G>A | ||||||
| HGVSp | CE30169:p.Trp907Ter | ||||||
| cDNA_position | 2742 | ||||||
| CDS_position | 2721 | ||||||
| Protein_position | 907 | ||||||
| Exon_number | 19/28 | ||||||
| Codon_change | tgG/tgA | ||||||
| Amino_acid_change | W/* | ||||||
| T10A3.1f.1 | VEP_consequence | stop_gained | |||||
| VEP_impact | HIGH | ||||||
| HGVSc | T10A3.1f.1:c.2676G>A | ||||||
| HGVSp | CE53547:p.Trp892Ter | ||||||
| cDNA_position | 2676 | ||||||
| CDS_position | 2676 | ||||||
| Protein_position | 892 | ||||||
| Exon_number | 19/27 | ||||||
| Codon_change | tgG/tgA | ||||||
| Amino_acid_change | W/* | ||||||
| Genetics | Interpolated_map_position | X | -1.78228 | ||||
| Reference | WBPaper00004891 | ||||||
| Method | Substitution_allele |
