WormBase Tree Display for Variation: WBVar00088829
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| WBVar00088829 | Evidence | Paper_evidence | WBPaper00004891 | ||
|---|---|---|---|---|---|
| Name | Public_name | md1117 | |||
| HGVSg | CHROMOSOME_X:g.7272295_7280895del | ||||
| Sequence_details | SMap | S_parent | Sequence | CHROMOSOME_X | |
| Flanking_sequences | tgcacaagctgtccattttttgtcaattca | atttaaatattaacgtcataaaaaaggaaa | |||
| Mapping_target | CHROMOSOME_X | ||||
| Type_of_mutation | Deletion | ||||
| SeqStatus | Sequenced | ||||
| Variation_type | Allele | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00029061 | ||||
| Laboratory | RM | ||||
| Status | Live | ||||
| Affects | Gene | WBGene00201334 | |||
| WBGene00195409 | |||||
| WBGene00006750 | |||||
| Transcript | T10A3.1a.1 | VEP_consequence | transcript_ablation | ||
| VEP_impact | HIGH | ||||
| Intron_number | 2-26/27 | ||||
| Exon_number | 1-28/28 | ||||
| T10A3.2 | VEP_consequence | transcript_ablation | |||
| VEP_impact | HIGH | ||||
| Exon_number | 1/1 | ||||
| T10A3.1f.1 | VEP_consequence | transcript_ablation | |||
| VEP_impact | HIGH | ||||
| Intron_number | 1-26/26 | ||||
| Exon_number | 1-27/27 | ||||
| T10A3.1c.1 | VEP_consequence | transcript_ablation | |||
| VEP_impact | HIGH | ||||
| Intron_number | 1-27/28 | ||||
| Exon_number | 1-29/29 | ||||
| T10A3.1d.1 | VEP_consequence | transcript_ablation | |||
| VEP_impact | HIGH | ||||
| Intron_number | 1-27/27 | ||||
| Exon_number | 1-28/28 | ||||
| T10A3.1e.1 | VEP_consequence | transcript_ablation | |||
| VEP_impact | HIGH | ||||
| Intron_number | 1-26/27 | ||||
| Exon_number | 1-28/28 | ||||
| T10A3.1b.1 | VEP_consequence | transcript_ablation | |||
| VEP_impact | HIGH | ||||
| Intron_number | 1-27/27 | ||||
| Exon_number | 1-28/28 | ||||
| T10A3.5 | VEP_consequence | transcript_ablation | |||
| VEP_impact | HIGH | ||||
| Exon_number | 1/1 | ||||
| Interactor | WBInteraction000501292 | ||||
| WBInteraction000502148 | |||||
| Genetics | Interpolated_map_position | X | -1.78159 | ||
| Description | Phenotype (19) | ||||
| Reference | WBPaper00038253 | ||||
| WBPaper00043908 | |||||
| WBPaper00015500 | |||||
| WBPaper00065360 | |||||
| WBPaper00065262 | |||||
| Method | Deletion_allele |
