WormBase Tree Display for Variation: WBVar00088120
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| WBVar00088120 | Evidence | Paper_evidence | WBPaper00004976 | ||
|---|---|---|---|---|---|
| Name | Public_name | js232 | |||
| Other_name | F37A4.7d.1:c.506-480_880-215del | ||||
| F37A4.7a.1:c.-5-480_370-215del | |||||
| F37A4.7b.1:c.220+383_595-215del | |||||
| F37A4.7a.2:c.-5-480_370-215del | |||||
| F37A4.7a.3:c.-6+383_370-215del | |||||
| F37A4.7c.1:c.23-480_397-215del | |||||
| HGVSg | CHROMOSOME_III:g.6696271_6697770del | ||||
| Sequence_details | SMap | S_parent | Sequence | F37A4 | |
| Flanking_sequences | attaagaaaaaccagaatttctgcaaaaat | ttccccccaagagtgggctagctctgtgtg | |||
| Mapping_target | F37A4 | ||||
| Type_of_mutation | Deletion | ||||
| SeqStatus | Sequenced | ||||
| Variation_type | Allele | ||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00029052 | ||||
| Laboratory | NM | ||||
| Status | Live | ||||
| Affects | Gene | WBGene00004316 | |||
| Transcript | F37A4.7b.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | ||
| VEP_impact | HIGH | ||||
| HGVSc | F37A4.7b.1:c.220+383_595-215del | ||||
| Intron_number | 1-4/17 | ||||
| Exon_number | 2-4/18 | ||||
| F37A4.7a.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | F37A4.7a.1:c.-5-480_370-215del | ||||
| Intron_number | 1-5/19 | ||||
| Exon_number | 2-5/20 | ||||
| F37A4.7c.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | F37A4.7c.1:c.23-480_397-215del | ||||
| Intron_number | 1-4/17 | ||||
| Exon_number | 2-4/18 | ||||
| F37A4.7a.3 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | F37A4.7a.3:c.-6+383_370-215del | ||||
| Intron_number | 1-5/19 | ||||
| Exon_number | 2-5/20 | ||||
| F37A4.7d.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | F37A4.7d.1:c.506-480_880-215del | ||||
| Intron_number | 4-7/20 | ||||
| Exon_number | 5-7/21 | ||||
| F37A4.7a.2 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant | |||
| VEP_impact | HIGH | ||||
| HGVSc | F37A4.7a.2:c.-5-480_370-215del | ||||
| Intron_number | 3-7/21 | ||||
| Exon_number | 4-7/22 | ||||
| Genetics | Interpolated_map_position | III | -1.00426 | ||
| Mapping_data | In_multi_point | 4626 | |||
| Reference | WBPaper00004976 | ||||
| Method | Deletion_allele |
