WormBase Tree Display for Variation: WBVar00088096
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| WBVar00088096 | Evidence | Paper_evidence | WBPaper00024571 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| Name | Public_name | jh113 | |||||||
| Sequence_details | Mapping_target | F38E11 | |||||||
| Type_of_mutation | Deletion | ||||||||
| SeqStatus | Pending_curation | ||||||||
| Variation_type | Allele | ||||||||
| Origin | Species | Caenorhabditis elegans | |||||||
| Strain | WBStrain00023531 | ||||||||
| WBStrain00023535 | |||||||||
| WBStrain00023536 | |||||||||
| WBStrain00023537 | |||||||||
| Laboratory | KJ | ||||||||
| Status | Live | ||||||||
| Affects | Gene | WBGene00000563 | |||||||
| Interactor | WBInteraction000501267 | ||||||||
| WBInteraction000501269 | |||||||||
| WBInteraction000520473 | |||||||||
| Genetics | Mapping_data | In_multi_point | 5122 | ||||||
| Description | Phenotype | WBPhenotype:0000203 | Paper_evidence | WBPaper00050905 | |||||
| Curator_confirmed | WBPerson3756 | ||||||||
| WBPhenotype:0000478 | Paper_evidence | WBPaper00042411 | |||||||
| Curator_confirmed | WBPerson2987 | ||||||||
| Remark | "While we observed no thermotaxis defects in che-6 mutants, we observed thermotaxis defects in animals lacking the cng-3 gene (Figure 9; Figure S3), which was previously shown to be expressed in the AFD thermosensory neurons (Cho et al. 2004)." | Paper_evidence | WBPaper00042411 | ||||||
| Curator_confirmed | WBPerson2987 | ||||||||
| EQ_annotations | GO_term | GO:0043052 | PATO:0000460 | Paper_evidence | WBPaper00042411 | ||||
| Curator_confirmed | WBPerson2987 | ||||||||
| WBPhenotype:0001090 | Paper_evidence | WBPaper00024571 | |||||||
| Curator_confirmed | WBPerson48 | ||||||||
| Phenotype_assay | Treatment | Young adult hermaphrodites grown at 20 deg. Hermaphrodites were transferred to prewarmed (35 deg) plates and maintained at that temperature. The number of dead worms was recorded at 30 minute intervals until all were dead. Animals that crawled up the side of the plate and died were excluded from the analysis. | Paper_evidence | WBPaper00024571 | |||||
| Curator_confirmed | WBPerson48 | ||||||||
| Genotype | cng-3(jh113) | Paper_evidence | WBPaper00024571 | ||||||
| Curator_confirmed | WBPerson48 | ||||||||
| WBPhenotype:0001780 | Paper_evidence | WBPaper00055533 | |||||||
| Curator_confirmed | WBPerson43506 | ||||||||
| Phenotype_not_observed (13) | |||||||||
| Reference | WBPaper00024571 | ||||||||
| WBPaper00042411 | |||||||||
| WBPaper00055533 | |||||||||
| WBPaper00050905 | |||||||||
| Remark | A 822bp deletion, which deleted a portion of exon 4 through to part way through exon 8. This results in a protein which is truncated before the S4 domain. | Paper_evidence | WBPaper00024571 | ||||||
| Method | Deletion_allele |
