WormBase Tree Display for Variation: WBVar00078313
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| WBVar00078313 | Name | Public_name | WBVar00078313 | |||
|---|---|---|---|---|---|---|
| Other_name | haw102673 | |||||
| cewivar00273302 | ||||||
| CE53186:p.Asn4158Ser | ||||||
| F39C12.1.1:c.12473A>G | ||||||
| HGVSg | CHROMOSOME_X:g.4838625T>C | |||||
| Sequence_details | SMap | S_parent | Sequence | F39C12 | ||
| Flanking_sequences | cactagtaccttcttcgcctttcta | tcgaagcttgtttcatcgatgcttt | ||||
| Mapping_target | F39C12 | |||||
| Type_of_mutation | Substitution | T | C | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis elegans | ||||
| Strain | WBStrain00004602 | From_analysis | Million_mutation_project_reanalysis | |||
| WGS_Hawaiian_Waterston | ||||||
| WBStrain00022850 | From_analysis | Million_mutation_project_reanalysis | ||||
| WBStrain00022852 | From_analysis | Million_mutation_project_reanalysis | ||||
| WBStrain00022856 | From_analysis | Million_mutation_project_reanalysis | ||||
| WBStrain00022878 | From_analysis | Million_mutation_project_reanalysis | ||||
| WBStrain00022886 | From_analysis | Million_mutation_project_reanalysis | ||||
| WBStrain00022902 | From_analysis | Million_mutation_project_reanalysis | ||||
| WBStrain00023072 | From_analysis | Million_mutation_project_reanalysis | ||||
| WBStrain00023138 | From_analysis | Million_mutation_project_reanalysis | ||||
| WBStrain00023139 | From_analysis | Million_mutation_project_reanalysis | ||||
| WBStrain00027648 | From_analysis | Million_mutation_project_reanalysis | ||||
| WBStrain00027660 | From_analysis | Million_mutation_project_reanalysis | ||||
| Laboratory | RW | |||||
| Person | WBPerson1562 | |||||
| Analysis | WGS_Hawaiian_Waterston | |||||
| Million_mutation_project_reanalysis | ||||||
| Status | Live | |||||
| Affects | Gene | WBGene00018193 | ||||
| Transcript | F39C12.1.1 | VEP_consequence | missense_variant | |||
| VEP_impact | MODERATE | |||||
| SIFT | 0.9 | tolerated_low_confidence | ||||
| PolyPhen | 0 | unknown | ||||
| HGVSc | F39C12.1.1:c.12473A>G | |||||
| HGVSp | CE53186:p.Asn4158Ser | |||||
| cDNA_position | 12603 | |||||
| CDS_position | 12473 | |||||
| Protein_position | 4158 | |||||
| Exon_number | 20/31 | |||||
| Codon_change | aAt/aGt | |||||
| Amino_acid_change | N/S | |||||
| Remark | [20081124 db] this Variation was previously named hw102673 | |||||
| Method | WGS_Hawaiian_Waterston |
