WormBase Tree Display for Variation: WBVar00065224
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| WBVar00065224 | Evidence | Paper_evidence | WBPaper00037807 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00065224 | |||
| Other_name | pas24642 | ||||
| cewivar00108053 | |||||
| F10E9.6c.1:c.449-1190A>G | |||||
| F10E9.6a.3:c.113-1190A>G | |||||
| F10E9.6a.1:c.113-1190A>G | |||||
| F10E9.6a.2:c.113-1190A>G | |||||
| HGVSg | CHROMOSOME_III:g.8299160A>G | ||||
| Sequence_details | SMap | S_parent | Sequence | F10E9 | |
| Flanking_sequences | tcaaaactgacttttttttgtttctaagtaaagacttttgcggtaggtaggcaagccttacatttgcgcctaccacatgcccagtatgaagtcttgtgcttggtacaacatagatttttttaattggcatttttcttgaaaatttagtaaattttgaaaatattattacaattttgttgaaaacggcggataacgttttggcaatatcaaagctcaaaaaaaaatcaacaaaattttgaaaaataaatttttactgaaaacagaagcctgatctggaaatatgattaattagcttctttt | atgacgtggacgttctatctacaatctgtcgcaattcgacctcatctatatcgcttctgtccgcctacttttgtgggctcttcctgctctccctctgtcactctatttctctcatcggtcagctgtgcacctgtctattatttgtgtgtcccctcctcttccatcatctcttaccactacttttctctgttattcttctcagcttaatgaggttttcaaatgatgcacagagattaactttgttttcattcaaaaccagtaattattgttattttttcaatacacaccactcaaaataat | |||
| Mapping_target | F10E9 | ||||
| Type_of_mutation | Substitution | A | G | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00000034 | From_analysis | Million_mutation_project_reanalysis | ||
| WBStrain00004599 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00004604 | From_analysis | WGS_Pasadena_Quinlan | |||
| WBStrain00006642 | From_analysis | WGS_De_Bono | |||
| WBStrain00006643 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00006645 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027647 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00031113 | From_analysis | Million_mutation_project_reanalysis | |||
| Laboratory | AX | ||||
| Person | WBPerson6900 | ||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| WGS_De_Bono | |||||
| Million_mutation_project_reanalysis | |||||
| History | Acquires_merge | WBVar01266166 | |||
| Status | Live | ||||
| Affects | Gene | WBGene00003243 | |||
| Transcript | F10E9.6a.3 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | F10E9.6a.3:c.113-1190A>G | ||||
| Intron_number | 4/12 | ||||
| F10E9.6a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F10E9.6a.1:c.113-1190A>G | ||||
| Intron_number | 2/10 | ||||
| F10E9.6c.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F10E9.6c.1:c.449-1190A>G | ||||
| Intron_number | 3/10 | ||||
| F10E9.6a.2 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F10E9.6a.2:c.113-1190A>G | ||||
| Intron_number | 3/11 | ||||
| Reference | WBPaper00037807 | ||||
| Method | WGS_Pasadena_Quinlan |
