WormBase Tree Display for Variation: WBVar00065194
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WBVar00065194 | Evidence | Paper_evidence | WBPaper00037807 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00065194 | |||
Other_name | pas24636 | ||||
haw44704 | |||||
cewivar00108049 | |||||
F10E9.6a.3:c.-12-5614C>A | |||||
F10E9.6c.1:c.325-5614C>A | |||||
F10E9.6a.2:c.-12-5614C>A | |||||
HGVSg | CHROMOSOME_III:g.8288423C>A | ||||
Sequence_details | SMap | S_parent | Sequence | F10E9 | |
Flanking_sequences | tttcggtttacacatctaaagtatttgtctggaaaaatgtttatcaagttttggaattaattttcgagcattttctgatacaattgaaaatctgcagctcttttacgggctcgggagaatttttgttttccgcaaaagaatgagcgtttttctgatgtacagttctaaattagtttttttaaaactatcagctttcaaatatctctttctccgattgccaatattaataaaaatgtattttccatagcctcatgtgaaaattgtcgcaattttctagtttctgagcttcacaaattgtca | gctcgcaagttttcacttgatattttgctaaaatattcgcggttttttgttgcaaattcacatatttcaaaggtgtgtcttgaccactcgaatacctcggaaatccgcgaaaactctgcggtaagcgcaaagagctcaagaccggaagcatctctcccgcgcgctcttgcgagaacaagagagataaaatgataaaagaatttgcctgaatctctcaatatctgtgccaactctttccttccaattgattgatcatgttctcactctcatcattcacacacattctctaattctcttcac | |||
Mapping_target | F10E9 | ||||
Type_of_mutation | Substitution | C | A | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain (30) | |||||
Laboratory | AX | ||||
RW | |||||
Person | WBPerson6900 | ||||
WBPerson1562 | |||||
Analysis | WGS_Pasadena_Quinlan | ||||
WGS_De_Bono | |||||
Million_mutation_project_reanalysis | |||||
WGS_Hawaiian_Waterston | |||||
History | Acquires_merge | WBVar00067913 | |||
WBVar01266162 | |||||
WBVar01331533 | |||||
Status | Live | ||||
Affects | Gene | WBGene00003243 | |||
Transcript | F10E9.6a.3 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | F10E9.6a.3:c.-12-5614C>A | ||||
Intron_number | 2/12 | ||||
F10E9.6c.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F10E9.6c.1:c.325-5614C>A | ||||
Intron_number | 2/10 | ||||
F10E9.6a.2 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | F10E9.6a.2:c.-12-5614C>A | ||||
Intron_number | 1/11 | ||||
Reference | WBPaper00037807 | ||||
Method | WGS_Pasadena_Quinlan |