WormBase Tree Display for Variation: WBVar00059055
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| WBVar00059055 | Evidence | Paper_evidence | WBPaper00004703 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00059055 | |||
| Other_name (12) | |||||
| HGVSg | CHROMOSOME_X:g.9093651C>T | ||||
| Sequence_details | SMap | S_parent | Sequence | H08J11 | |
| Flanking_sequences | acggtgcttttttgcattgattttggtgtttttactccatttcattttaactatcgcttgttcaaactcccgttttcttccatccggattttttattgatgcatcttgtaatccatcgctcaaaatgcaaaaaaaatcaatgaaaacgatatgggtgatgattatattgtttggtcacgaacagttatgcaaatcgactatgatggttcccaccatcccgtcccccgtcctttccgcttcactccgttttctcgtttgtctttttctttttgatggcctcgcaccatcaaaattatgtgg | tttgagcatttgagcatttacactggttaaaatatttttgagagccaattgccaaatcattcgaaaaacccaatatgaaaacatttttctgaatttttaaaaataaggtgaaagatagaacgtacaacatgagtacaatttgggcaatatcctgttgccatgaaattagaatgttttcattcaaataatattaagaggtcaaataaaattttcgtttgcttgatttagtttgaaaattggtctctaatttattttgaaagtttgctaagaaatttaacaaacttgccgtttttgtaaacg | |||
| Mapping_target | H08J11 | ||||
| Type_of_mutation | Substitution | C | T | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (38) | |||||
| Laboratory | RW | ||||
| Person | WBPerson6900 | ||||
| WBPerson1562 | |||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| Million_mutation_project_reanalysis | |||||
| SNP_Wicks | |||||
| WGS_Hawaiian_Waterston | |||||
| History | Acquires_merge | WBVar00081763 | |||
| WBVar00245317 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00000100 | |||
| Transcript | C25A11.4d.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | C25A11.4d.1:c.1071+1079C>T | ||||
| Intron_number | 8/29 | ||||
| C25A11.4a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C25A11.4a.1:c.-205+1079C>T | ||||
| Intron_number | 7/30 | ||||
| C25A11.4f.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C25A11.4f.1:c.1071+1079C>T | ||||
| Intron_number | 7/28 | ||||
| C25A11.4a.3 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C25A11.4a.3:c.-205+1079C>T | ||||
| Intron_number | 2/25 | ||||
| C25A11.4c.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C25A11.4c.1:c.1071+1079C>T | ||||
| Intron_number | 8/23 | ||||
| C25A11.4k.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C25A11.4k.1:c.288+1079C>T | ||||
| Intron_number | 1/22 | ||||
| C25A11.4a.2 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C25A11.4a.2:c.-205+1079C>T | ||||
| Intron_number | 3/26 | ||||
| C25A11.4b.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C25A11.4b.1:c.1071+1079C>T | ||||
| Intron_number | 7/18 | ||||
| Reference | WBPaper00004703 | ||||
| Method | WGS_Pasadena_Quinlan |
