WormBase Tree Display for Variation: WBVar00056331
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| WBVar00056331 | Evidence | Paper_evidence | WBPaper00037807 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00056331 | |||
| Other_name | pas22863 | ||||
| haw43147 | |||||
| cewivar00106586 | |||||
| F52C9.7.2:c.*16T>G | |||||
| F52C9.7.1:c.*16T>G | |||||
| HGVSg | CHROMOSOME_III:g.5311093T>G | ||||
| Sequence_details | SMap | S_parent | Sequence | F52C9 | |
| Flanking_sequences | tggctgaaatgcatggttttgcatcatttccgtctttatttattccccaaaagctagaaattccctattccccatgcatttttatcagtgatcacgctggttttcacttggaacaagcttttaatacaaaaactgtgaaatttcctgtaaaatgtattttttaattacagatctcaaatgcgcgaagcctgtgacgatatgacagtggagaagcgtctacaaagtaataaacgcggtgttcaacgagcacacgggtatatggatcggagttttgcgaagaaatgagcaaaaattgttatt | ttaaactcccatgttttgttgattataaaatattgattttcttgttctttccctcactttctctttttttattatggaattccggtcgcaaaccgagattattatctttttattgctttattttatttttattctcttaataatcattccagcaagtatctcagccatgtttaatggcggctatggatctggaaacagctttaatcttcaaaactatgcaccaatcgatccgatgagtgagttcaactttccacctttttctgaaatatgcctttgtttttgttatttttcaacggtttt | |||
| Mapping_target | F52C9 | ||||
| Type_of_mutation | Substitution | T | G | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (109) | |||||
| Laboratory | AX | ||||
| RW | |||||
| Person | WBPerson6900 | ||||
| WBPerson1562 | |||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| WGS_De_Bono | |||||
| Million_mutation_project_reanalysis | |||||
| WGS_Hawaiian_Waterston | |||||
| WGS_Andersen | |||||
| History | Acquires_merge | WBVar01445700 | |||
| WBVar00060126 | |||||
| WBVar01263558 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00003391 | |||
| Transcript | F52C9.7.1 | VEP_consequence | 3_prime_UTR_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | F52C9.7.1:c.*16T>G | ||||
| cDNA_position | 1372 | ||||
| Exon_number | 8/8 | ||||
| F52C9.7.2 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F52C9.7.2:c.*16T>G | ||||
| cDNA_position | 1378 | ||||
| Exon_number | 9/9 | ||||
| Reference | WBPaper00037807 | ||||
| Method | WGS_Pasadena_Quinlan |
