WormBase Tree Display for Variation: WBVar00052576

WBVar00052576 Name: Public_name: WBVar00052576
    Other_name: pas22112
      snp_C50F4[2]
      haw81059
      cewivar00047053
      CE26799:p.Ile225Thr
      C50F4.1.1:c.674T>C
    HGVSg: CHROMOSOME_V:g.9528381T>C
  Sequence_details: SMap: S_parent: Sequence: C50F4
    Flanking_sequences: cctcacagattgcaaagttacacgctgtcaactcaaaaactatcaataaacaattctcactcaatgtgcaagaaaattatggaaacatcatatcattcaaaaagaaaattcaaaaagaattgattgaagtgttggaaacagcagtaactactacagaagttgcagactacttcatgaatccatcctcagttattgaaaaagttggaattttgactcattacttggaagattggaaagatgaagatgcagatgaaaaggaaaaacataatgttatcgcacatggaagattgacagctgaga ttgcagatttgatgaggatgggaatttggtagagatcacagaatgggaagtacgtaattatttttaaaatagaaaaaactgcgttctactataatttttacttttgatctttcaacaacgaaaacctaattaatttagaacattcatcttggaaatccagtggaggatttagcaaatttgattgtttcatctgcagatgtcgacattcgacgaaaaaagttcatgaaagtgggttcgagagtcttatgggaacggcagagcaccagatgtttttgatgtaatttgttttaattttagata
    Mapping_target: C50F4
    Type_of_mutation: Substitution: T C
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    Natural_variant
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00000032 From_analysis: Million_mutation_project_reanalysis
      WBStrain00000034 From_analysis: Million_mutation_project_reanalysis
      WBStrain00004599 From_analysis: Million_mutation_project_reanalysis
      WBStrain00004600 From_analysis: Million_mutation_project_reanalysis
      WBStrain00004602 From_analysis: SNP_Wicks
          WGS_Hawaiian_Waterston
          Million_mutation_project_reanalysis
      WBStrain00004604 From_analysis: WGS_Pasadena_Quinlan
      WBStrain00006622 From_analysis: Million_mutation_project_reanalysis
      WBStrain00006625 From_analysis: Million_mutation_project_reanalysis
      WBStrain00006629 From_analysis: Million_mutation_project_reanalysis
      WBStrain00006631 From_analysis: Million_mutation_project_reanalysis
      WBStrain00006637 From_analysis: Million_mutation_project_reanalysis
      WBStrain00006640 From_analysis: Million_mutation_project_reanalysis
      WBStrain00006642 From_analysis: WGS_De_Bono
      WBStrain00006643 From_analysis: Million_mutation_project_reanalysis
      WBStrain00006645 From_analysis: Million_mutation_project_reanalysis
      WBStrain00008273 From_analysis: Million_mutation_project_reanalysis
      WBStrain00022850 From_analysis: Million_mutation_project_reanalysis
      WBStrain00022852 From_analysis: Million_mutation_project_reanalysis
      WBStrain00022856 From_analysis: Million_mutation_project_reanalysis
      WBStrain00022868 From_analysis: Million_mutation_project_reanalysis
      WBStrain00022878 From_analysis: Million_mutation_project_reanalysis
      WBStrain00022883 From_analysis: Million_mutation_project_reanalysis
      WBStrain00022886 From_analysis: Million_mutation_project_reanalysis
      WBStrain00022887 From_analysis: Million_mutation_project_reanalysis
      WBStrain00022899 From_analysis: Million_mutation_project_reanalysis
      WBStrain00022902 From_analysis: Million_mutation_project_reanalysis
      WBStrain00022930 From_analysis: Million_mutation_project_reanalysis
      WBStrain00023018 From_analysis: Million_mutation_project_reanalysis
      WBStrain00023072 From_analysis: Million_mutation_project_reanalysis
      WBStrain00023138 From_analysis: Million_mutation_project_reanalysis
      WBStrain00023139 From_analysis: Million_mutation_project_reanalysis
      WBStrain00023191 From_analysis: Million_mutation_project_reanalysis
      WBStrain00023192 From_analysis: Million_mutation_project_reanalysis
      WBStrain00023286 From_analysis: Million_mutation_project_reanalysis
      WBStrain00023665 From_analysis: Million_mutation_project_reanalysis
      WBStrain00024204 From_analysis: Million_mutation_project_reanalysis
      WBStrain00027647 From_analysis: Million_mutation_project_reanalysis
      WBStrain00027648 From_analysis: Million_mutation_project_reanalysis
      WBStrain00027652 From_analysis: Million_mutation_project_reanalysis
      WBStrain00027660 From_analysis: Million_mutation_project_reanalysis
      WBStrain00027662 From_analysis: Million_mutation_project_reanalysis
      WBStrain00031113 From_analysis: Million_mutation_project_reanalysis
    Laboratory: AX
      RW
    Person: WBPerson6900
      WBPerson1562
    Analysis: WGS_Pasadena_Quinlan
      WGS_De_Bono
      Million_mutation_project_reanalysis
      SNP_Wicks
      WGS_Hawaiian_Waterston
    History: Acquires_merge: WBVar00213783
        WBVar01274879
        WBVar00243764
    Status: Live
  Affects: Gene: WBGene00008229
    Transcript: C50F4.1.1 VEP_consequence: missense_variant
        VEP_impact: MODERATE
        SIFT: 0.55 tolerated
        PolyPhen: 0 benign
        HGVSc: C50F4.1.1:c.674T>C
        HGVSp: CE26799:p.Ile225Thr
        cDNA_position: 726
        CDS_position: 674
        Protein_position: 225
        Exon_number: 3/7
        Codon_change: aTt/aCt
        Amino_acid_change: I/T
  Reference: WBPaper00004703
    WBPaper00037807
  Method: WGS_Pasadena_Quinlan