WormBase Tree Display for Variation: WBVar00052401
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WBVar00052401 | Evidence | Paper_evidence | WBPaper00038208 | |||
---|---|---|---|---|---|---|
Name | Public_name | WBVar00052401 | ||||
Other_name | pas22077 | |||||
haw43044 | ||||||
haw143296 | ||||||
cewivar00106456 | ||||||
CE46494:p.Leu96Ile | ||||||
C35D10.5.1:c.286C>A | ||||||
HGVSg | CHROMOSOME_III:g.4862681C>A | |||||
Sequence_details | SMap | S_parent | Sequence | C35D10 | ||
Flanking_sequences | acgcctagctacatcgtctcgagttctttccaatgcgaacaaaaagacagtagaagatatgacgcaagagatgttgcaagtaaatctctgagtaaatatattaaaggcaaaagaaaatttcagatgccagtctcaagagttcctccaactattcaacgattcgcgacatctctaaaaatgaaattcaagtccgacggtcttgatcaatcagtgaaatctattcttgaccgcgcatcagctcaactttattacaattgtgcagataattatgatttcgcaaagctctgtgaggcatttgga | ttggagattatatgtcttcgtggtaagctttcacctttagttttttaaccattattactccaaaacttcaggtacaagttgacactaatgcatacatggatggtattgatgagacttcattcagaatttgatggaaaagcatacatgagattacagcgaggtcttttatcaacaatgtggctggatattgataataggtaaaaaaataaatttcagagaatactttgaatatatattttcaggctaggaattgtgagcaaagagttgaatcaaattatgacggggcaaaatgatatgaag | ||||
Mapping_target | C35D10 | |||||
Type_of_mutation | Substitution | C | A | |||
SeqStatus | Sequenced | |||||
Variation_type | SNP | |||||
Predicted_SNP | ||||||
Natural_variant | ||||||
Origin | Species | Caenorhabditis elegans | ||||
Strain | WBStrain00000034 | From_analysis | Million_mutation_project_reanalysis | |||
WBStrain00004599 | From_analysis | Million_mutation_project_reanalysis | ||||
WBStrain00004602 | From_analysis | WGS_Hawaiian_Waterston | ||||
WGS_Yanai | ||||||
Million_mutation_project_reanalysis | ||||||
WBStrain00004604 | From_analysis | WGS_Pasadena_Quinlan | ||||
WBStrain00023139 | From_analysis | Million_mutation_project_reanalysis | ||||
WBStrain00027648 | From_analysis | Million_mutation_project_reanalysis | ||||
WBStrain00027660 | From_analysis | Million_mutation_project_reanalysis | ||||
WBStrain00027662 | From_analysis | Million_mutation_project_reanalysis | ||||
Laboratory | RW | |||||
Person | WBPerson6900 | |||||
WBPerson4037 | ||||||
WBPerson1562 | ||||||
Analysis | WGS_Pasadena_Quinlan | |||||
WGS_Yanai | ||||||
Million_mutation_project_reanalysis | ||||||
WGS_Hawaiian_Waterston | ||||||
History | Acquires_merge | WBVar00059611 | ||||
WBVar00563161 | ||||||
Status | Live | |||||
Affects | Gene | WBGene00016442 | ||||
Transcript | C35D10.5.1 | VEP_consequence | missense_variant | |||
VEP_impact | MODERATE | |||||
SIFT | 0 | deleterious | ||||
PolyPhen | 1 | probably_damaging | ||||
HGVSc | C35D10.5.1:c.286C>A | |||||
HGVSp | CE46494:p.Leu96Ile | |||||
cDNA_position | 287 | |||||
CDS_position | 286 | |||||
Protein_position | 96 | |||||
Exon_number | 3/7 | |||||
Codon_change | Ctt/Att | |||||
Amino_acid_change | L/I | |||||
Reference | WBPaper00038208 | |||||
Method | WGS_Pasadena_Quinlan |