WormBase Tree Display for Variation: WBVar00051056
expand all nodes | collapse all nodes | view schema
| WBVar00051056 | Name | Public_name | WBVar00051056 | ||
|---|---|---|---|---|---|
| Other_name | pas21808 | ||||
| haw105159 | |||||
| cewivar00058666 | |||||
| C54D2.5a.1:c.-76-4486T>C | |||||
| C54D2.5a.2:c.-76-4486T>C | |||||
| HGVSg | CHROMOSOME_X:g.7865793A>G | ||||
| Sequence_details | SMap | S_parent | Sequence | C54D2 | |
| Flanking_sequences | aatatagagattatactaaaactgatacgagaaagggtagcacgaaaaatggagataacaagaaatagaattatgacatgtcagcaaacccggatttgcggatttgattttctctcgttttccaccattctctattctgatctcattgaaagcatcactctaaaaaactatgttttcggcaaaaatactagtttttggtaagcatatttaagttaaattttttctcttatggtgctaatcatattctgggaaaaaaactgataagaattttaaagtctattgcaaaaacagaaatatatg | cctggaccgaaaaaattcgtattttgaataaaactggtagtaaaataaacattttctatgagaagtaacaatgctggctacaataaaactgtaaaaaagtccctgcaatttttttattgataacaatttttaaggtaaggctactacatacacaccgttaataattgttgcaatttggtctaagaactaggagcaaattctgcttcaccgaaattcgaaaataatactaacacataaaaatggcgctttctcaaaccttgtgatatccaatgaaatcttgcaaattcttaggtattttgc | |||
| Mapping_target | C54D2 | ||||
| Type_of_mutation | Substitution | A | G | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (35) | |||||
| Laboratory | RW | ||||
| Person | WBPerson6900 | ||||
| WBPerson1562 | |||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| Million_mutation_project_reanalysis | |||||
| WGS_Hawaiian_Waterston | |||||
| History | Acquires_merge | WBVar00080799 | |||
| Status | Live | ||||
| Affects | Gene | WBGene00000367 | |||
| Transcript | C54D2.5a.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | C54D2.5a.1:c.-76-4486T>C | ||||
| Intron_number | 1/31 | ||||
| C54D2.5a.2 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C54D2.5a.2:c.-76-4486T>C | ||||
| Intron_number | 2/32 | ||||
| Method | WGS_Pasadena_Quinlan |
