WormBase Tree Display for Variation: WBVar00051031
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| WBVar00051031 | Name | Public_name | WBVar00051031 | ||
|---|---|---|---|---|---|
| Other_name | pas21803 | ||||
| haw105149 | |||||
| cewivar00058655 | |||||
| C54D2.5a.2:c.-76-890T>A | |||||
| C54D2.5a.1:c.-76-890T>A | |||||
| HGVSg | CHROMOSOME_X:g.7862197A>T | ||||
| Sequence_details | SMap | S_parent | Sequence | C54D2 | |
| Flanking_sequences | agacgatttcggttggttggttgaatatgcggcgctctgcgagcatgaatctgctctgcttatagtatatgaattgtccgatgatattatttcagtttttagggggtgatgagagacgaacgtgtgaatgcgccaataggggagaacaatacacgagagccacacaattttgcttcataatttgagaatttgtactaaaaatgtggtttccaaaaatatttctaatacattctttaaaaatttacgcataaacaaagtactttttgcaaataataataatttcaaaacgtaaattttttt | aatattgatatcatgatttggttaattgttttaaaatgtaataaggccaataagaagccttgttttgactatttatagtgctaaaatatgcaaatatcataggaaaactgttttagaaaaataattacatctcatgactttaaaagtcaacaaaaaatcgtttttgctacttctgctttttgaagtatagcgaaaagtcagttttttgaactatttccaaaataaatttgtctgaaaataatgaaatttctaaataattattgtaaagtaagtacataacaggactgtttcttgaaattt | |||
| Mapping_target | C54D2 | ||||
| Type_of_mutation | Substitution | A | T | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (35) | |||||
| Laboratory | RW | ||||
| Person | WBPerson6900 | ||||
| WBPerson1562 | |||||
| Analysis | WGS_Pasadena_Quinlan | ||||
| Million_mutation_project_reanalysis | |||||
| WGS_Hawaiian_Waterston | |||||
| History | Acquires_merge | WBVar00080789 | |||
| Status | Live | ||||
| Affects | Gene | WBGene00000367 | |||
| Transcript | C54D2.5a.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | C54D2.5a.1:c.-76-890T>A | ||||
| Intron_number | 1/31 | ||||
| C54D2.5a.2 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C54D2.5a.2:c.-76-890T>A | ||||
| Intron_number | 2/32 | ||||
| Method | WGS_Pasadena_Quinlan |
